Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00758 ATGTCTCGAATTTATGTTGGGAACTTGGATCCACGAGTCACAGAGAGAGAACTCGAAGATGATTTTCGAGCCTACGGCGTTCTTCGGAGTGTGTGGGTTGCACGAAAGCCACCAGGTTATGCATTTGTTGAGTTCGATGATCGTAGAGATGCATTAGATGCAATACGTGCATTGGATGGGAAGAATGGCTGGCGTGTGGAGCTTTCTCATAATTCTAAGGGAGGCAGTGGAGGTCGTGGTGGTGGTGGTGGACGTGGGCGTGGTGGAGGCGATGACTTGAAGTGTTATGAATGTGGGGAACCTGGTCATTTTGCTCGTGAATGTCGCTTACGTGTTGGCTCGCGAGGCATGGGAAGTGGACGGCGTCGAAGCCCCAGTCCTCGGCGCCGAATGAGCCCAAGTTATGGGCGCAGAGAACCTACATCTCATGGCAGGAGTGACAGCCCCTATAAAAGAAGATCTCCACGACGTCGCAGCATATCACCCCGCCGTGGCCGTAGCTACAGCAGATCACCACCACCTCGCCATGCTCCTCATGATTCACCTTATGCAAATGGAGATCAACGCAGGAGCCGGAGCCGGAGTCGGAGCCGGAGCTGA 600 0.54 MSRIYVGNLDPRVTERELEDDFRAYGVLRSVWVARKPPGYAFVEFDDRRDALDAIRALDGKNGWRVELSHNSKGGSGGRGGGGGRGRGGGDDLKCYECGEPGHFARECRLRVGSRGMGSGRRRSPSPRRRMSPSYGRREPTSHGRSDSPYKRRSPRRRSISPRRGRSYSRSPPPRHAPHDSPYANGDQRRSRSRSRSRS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00758 199 MobiDBLite consensus disorder prediction 150 164 - -
Eupl04g00758 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Eupl04g00758 199 CDD RRM_SRSF3_like 3 71 - -
Eupl04g00758 199 MobiDBLite consensus disorder prediction 66 88 - -
Eupl04g00758 199 Gene3D - 83 159 - -
Eupl04g00758 199 MobiDBLite consensus disorder prediction 114 199 - -
Eupl04g00758 199 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Eupl04g00758 199 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Eupl04g00758 199 SMART rrm1_1 3 69 IPR000504 GO:0003723
Eupl04g00758 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Eupl04g00758 199 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 193 - -
Eupl04g00758 199 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Eupl04g00758 199 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Eupl04g00758 199 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Eupl04g00758 199 SUPERFAMILY Retrovirus zinc finger-like domains 86 111 IPR036875 GO:0003676|GO:0008270
Eupl04g00758 199 MobiDBLite consensus disorder prediction 132 149 - -
Eupl04g00758 199 Gene3D - 1 73 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00758 Eupl-Chr4 11707497 11714815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00758 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 40.323 1.55e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00758 K12896 - ming:122079767 209.149