Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00753 ATGAATAGCAGAAATCCCTCTTCGGCGTCGAAATTCCGCCCTTTCCGGCGATCTTCTTCGCCGAACGACAACCAGAAGCCATGGAGGTATCAAATTCTCGATCCAGGTGGCGAGATCGTCACGCGATGGAATCGAGCTTTCCTCATTTGTTGTCTGGGGGCGCTCTTCCTCGATCCACTATATTTCTACCTTCCTTCAGTCGGCGGTCCAGGTTGCATGAAGGTGGACGTGAAATTGGGGATTATCGTCACGTTCTTTAGATCGGTGGCCGATCTTTTCTACTTAGTGCATATGATCATGAAGTTCCGGACAGCATTTGTCGCACGGAGTTCTAGGGTTTTTGGGAGAGGCGAGCTCGTCATGGATGCGCGAGAGATTGCGTTGCGGTACTTAAAGTCGGATTTCCTGACTGATCTCGCTGCAATGCTGCCGTTACCTCAGATCGTCAATTGGTCGATTATTCCAGCATTGAGAAGCTCCACTTCTGATCATTCTAGTAACACTCTTGCACTGATTGTTCTCATTCAGTACGTCCCTAGATTGTTTATAATTTTCCCTTTGAATCGACGGATCATCAAAACTACTGGGGTTGTTGCCAAGACTTCTTGGGCAGGAGCTGCATACAATCTCCTACTTTACATGCTAGCCAGTCATGTTTTGGGAGCTTCCTGGTATCTGCTGTCTATTGAACGGCAGCATTCCTGCTGGAGAATAGAGTGTGGGAAGGAGAATGCTATGCACATGCTATCTTGTAAGCCTTTTTTTCTGGACTGTAGTAGTTTGGAACAGGCTGAACGGGAATCCTGGGTGAACGTCACTCGAGTGTTTGCTAACTGTGATGCTACTAATAGTGAGATCCCTTTTAAGTATGGGATGTTTGCGGATGCTTTTACTAACGAAGTTGTTTCATCGAAGTTCCTTGAGAAGTATTTTTATTGCCTTTGGTGGGGTTTGAAAAATTTAAGTTCATATGGACAGAATTTGGTGACAAGCACTTTTATTGGTGAGACATTATTTTGCATTCTTATATGCATTGTGGGTCTAGTTCTTTTCTCACACCTGATTGGTAACATGCAGACCTTTTTGCAATCTACAACGATGAGACTTGAAGAGTGGAGAGTTAAGCGGAGAGATACTGAGGAGTGGATGAGGCACCGCCAACTACCTGTAGATCTGCAAGAACGCGTTCGCCGGTTTGTTCAGTATAAATGGCTTGCCACAAGAGGAGTAGATGAAGAATCTATTTTGCGTTCCTTACCTTTGGACCTCCGTCGTGAAATCCAACGGCATCTATGTCTTGCTCTTGTTCGACGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTCCTGGATGCTATATGCGAACGCCTCGTCTCATCCTTGAGCACCAAAGACACCTACATTGTTCGTGAGGGCGATCCAGTGAATGAGATGCTCTTCATCATCCGAGGGCAACTAGAGAGCTCCACGACCAATGGAGGAAGGTCAGGATTCTTCAACTCTATCACCCTCAGACCTGGTGACTTCTGCGGTGAAGAATTGCTGACGTGGGCCTTAGTGCCCACCTCTAGCCTAAACCTGCCATCCTCAACTCGAACTGTCCGAGCCCTTGGTGAAGTTGAAGCATTCGCACTCCGTGCCGAAGACTTGAAGTTTGTTGCCAATCAGTTCAGGCGCCTTCACAGCAAGAAGCTGCAACACGCCTTCAGATACTATTCCCACCAGTGGAGAACGTGGGGAGCTTGCTTTATACAAGCTGCATGGAGACGGTTAAAGAAAAAGAAACTGGCAAAGGAGCTGGCAAGACAAGAGAGCTTCTTCTATATGCCAAGTCCTGACCAAGAGAGTAACTATGGTGATGAGGCCCTAGATGGGGGCTACCAGGATGGTGGTGCAGACAGCTCGTTGATTGGCAATGATAACAACTTTCAGCATCTTGGGGCCACGATTCTAGCTTCGAGGTTTGCCGCGAATACAAGAAGAGGGGTTATTCAAAAGGTGAAGGCCGTTGACCCTGCTAATAGCAGCTTAAAGATGCCTAAGCTATGTAAGCCAGATGAGCCTGATTTCTCCGCGAATGCGGAGGATGGTTGA 2094 0.4718 MNSRNPSSASKFRPFRRSSSPNDNQKPWRYQILDPGGEIVTRWNRAFLICCLGALFLDPLYFYLPSVGGPGCMKVDVKLGIIVTFFRSVADLFYLVHMIMKFRTAFVARSSRVFGRGELVMDAREIALRYLKSDFLTDLAAMLPLPQIVNWSIIPALRSSTSDHSSNTLALIVLIQYVPRLFIIFPLNRRIIKTTGVVAKTSWAGAAYNLLLYMLASHVLGASWYLLSIERQHSCWRIECGKENAMHMLSCKPFFLDCSSLEQAERESWVNVTRVFANCDATNSEIPFKYGMFADAFTNEVVSSKFLEKYFYCLWWGLKNLSSYGQNLVTSTFIGETLFCILICIVGLVLFSHLIGNMQTFLQSTTMRLEEWRVKRRDTEEWMRHRQLPVDLQERVRRFVQYKWLATRGVDEESILRSLPLDLRREIQRHLCLALVRRVPFFSQMDDQLLDAICERLVSSLSTKDTYIVREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPTSSLNLPSSTRTVRALGEVEAFALRAEDLKFVANQFRRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRLKKKKLAKELARQESFFYMPSPDQESNYGDEALDGGYQDGGADSSLIGNDNNFQHLGATILASRFAANTRRGVIQKVKAVDPANSSLKMPKLCKPDEPDFSANAEDG* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00753 697 SUPERFAMILY cAMP-binding domain-like 370 566 IPR018490 -
Eupl04g00753 697 Gene3D Helix hairpin bin 368 432 - -
Eupl04g00753 697 PRINTS EAG/ELK/ERG potassium channel family signature 354 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g00753 697 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g00753 697 PRINTS EAG/ELK/ERG potassium channel family signature 336 347 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g00753 697 PRINTS EAG/ELK/ERG potassium channel family signature 310 327 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g00753 697 PRINTS EAG/ELK/ERG potassium channel family signature 404 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g00753 697 MobiDBLite consensus disorder prediction 1 27 - -
Eupl04g00753 697 Gene3D - 71 365 - -
Eupl04g00753 697 Gene3D Jelly Rolls 439 559 IPR014710 -
Eupl04g00753 697 Pfam Ion transport protein 43 367 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Eupl04g00753 697 ProSiteProfiles cAMP/cGMP binding motif profile. 441 571 IPR000595 -
Eupl04g00753 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 690 - -
Eupl04g00753 697 Pfam Cyclic nucleotide-binding domain 464 552 IPR000595 -
Eupl04g00753 697 FunFam Cyclic nucleotide-gated ion channel 1 368 432 - -
Eupl04g00753 697 SMART cnmp_10 441 572 IPR000595 -
Eupl04g00753 697 FunFam Cyclic nucleotide-gated ion channel 1 439 557 - -
Eupl04g00753 697 MobiDBLite consensus disorder prediction 1 28 - -
Eupl04g00753 697 SUPERFAMILY Voltage-gated potassium channels 35 363 - -
Eupl04g00753 697 MobiDBLite consensus disorder prediction 676 697 - -
Eupl04g00753 697 CDD CAP_ED 441 572 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00753 Eupl-Chr4 11600891 11629011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00753 28 696 Ion Channels AT5G14870 71.365 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00753 K05391 - ming:122077935 1118.22