Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00752 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACAATAACTCTCGAAGTAGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGTATCCCCCCGGATCAGCAAAGACTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACCCTTGCAGATTACAACATCCAGAAAGAGTCGACGCTTCATCTGGTGTTGCGGCTTAGGGGCGGGACTATGATCAAGGTTAAGACACTTACTGGTAAGGAAATTGAAATTGATATTGAACCAAATGATACCATTGACCGGATCAAGGAGCGGGTTGAGGAGAAAGAAGGGATCCCTCCAGTGCAGCAAAGGTATCTTTTTCTTTCTTATTTTGATCAAACTTCAGAATTTGAGTTGTGTACACAAGATGTACCATACTGCTCTCTCTCACTGTGTGTGTGTGTGTGTTCACACACACACCTTCCAAGGATTTAA 477 0.4382 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRYLFLSYFDQTSEFELCTQDVPYCSLSLCVCVCSHTHLPRI* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00752 158 SMART ubq_7 1 72 IPR000626 GO:0005515
Eupl04g00752 158 SMART ubq_7 77 151 IPR000626 GO:0005515
Eupl04g00752 158 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Eupl04g00752 158 FunFam Polyubiquitin 3 1 76 - -
Eupl04g00752 158 Gene3D - 1 76 - -
Eupl04g00752 158 SUPERFAMILY Ubiquitin-like 77 121 IPR029071 -
Eupl04g00752 158 PANTHER UBIQUITIN 79 121 - -
Eupl04g00752 158 ProSiteProfiles Ubiquitin domain profile. 77 121 IPR000626 GO:0005515
Eupl04g00752 158 CDD Ubl_ubiquitin 1 76 - -
Eupl04g00752 158 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Eupl04g00752 158 Gene3D - 77 123 - -
Eupl04g00752 158 PRINTS Ubiquitin signature 11 31 IPR019956 -
Eupl04g00752 158 PRINTS Ubiquitin signature 53 74 IPR019956 -
Eupl04g00752 158 PRINTS Ubiquitin signature 32 52 IPR019956 -
Eupl04g00752 158 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Eupl04g00752 158 Pfam Ubiquitin family 79 121 IPR000626 GO:0005515
Eupl04g00752 158 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00752 Eupl-Chr4 11593804 11598501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00752 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.63e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00752 K12158 - thj:104798542 233.417