Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00751 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACAATAACTCTCGAAGTAGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGTATCCCCCCAGATCAGCAAAGACTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACCCTTGCAGATTACAACATCCAGAAAGAGTCGACACTTCATCTGGTTTTGCGGCTTAGGGGCGGGACTATGATTAAGGTGAAGACACTTACTGGTAAGGAAATTGAAATTGATATTGAACCAAATGATACCATTGACCGGATCAAGGAGCGGGTTGAGGAGAAAGAAGGGATCCCTCCAGTGCAGCAAAGGCTTATTTATGCTGGTAAGCAGCTTGCAGATGACAAAACTGCTCGGGACTACAACATTGAAGGTGGTTCTGTTCTTCATCTCAATTCGAGTGGGCTCTTTTCAGTTCGTTCTTTCTACTCAACTCTAGATGCATTCTCGAGTGGTATCTTTCTAGCATCAATGATCCTGAAATTTGTCCGATCAAATGAGCTGGCCATACACCAAATTGTTAGATCGAGCAACACACGATCACAACGTCGACAGTTCATCTCTTCGTCTAATCATAAACCCAATAATTCTGGGGAAATGATTTTTCCAGATTCTTTTGGTCAACATTTGATGGTGTTTGAGGAAAAATGTCCGTTGAACAAAATTATCCTTCATTGA 720 0.425 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLNSSGLFSVRSFYSTLDAFSSGIFLASMILKFVRSNELAIHQIVRSSNTRSQRRQFISSSNHKPNNSGEMIFPDSFGQHLMVFEEKCPLNKIILH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00751 239 PRINTS Ubiquitin signature 11 31 IPR019956 -
Eupl04g00751 239 PRINTS Ubiquitin signature 53 74 IPR019956 -
Eupl04g00751 239 PRINTS Ubiquitin signature 32 52 IPR019956 -
Eupl04g00751 239 SUPERFAMILY Ubiquitin-like 79 146 IPR029071 -
Eupl04g00751 239 Gene3D - 1 76 - -
Eupl04g00751 239 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Eupl04g00751 239 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Eupl04g00751 239 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Eupl04g00751 239 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Eupl04g00751 239 Pfam Ubiquitin family 79 146 IPR000626 GO:0005515
Eupl04g00751 239 Gene3D - 77 147 - -
Eupl04g00751 239 ProSiteProfiles Ubiquitin domain profile. 77 145 IPR000626 GO:0005515
Eupl04g00751 239 FunFam Polyubiquitin 3 1 76 - -
Eupl04g00751 239 CDD Ubl_ubiquitin 1 76 - -
Eupl04g00751 239 PANTHER UBIQUITIN 79 146 - -
Eupl04g00751 239 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Eupl04g00751 239 FunFam NEDD8 protein 77 148 - -
Eupl04g00751 239 CDD Ubl_NEDD8 79 145 IPR038738 -
Eupl04g00751 239 SMART ubq_7 1 72 IPR000626 GO:0005515
Eupl04g00751 239 SMART ubq_7 77 148 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00751 Eupl-Chr4 11575010 11586729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00751 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 2.11e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00751 K12158 - egt:105967191 283.878