Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00747 ATGATCCAAAAAACCGATCGCCGGATTTTGACATTTCCGGCCGTTCATCCCTGCGAAGGCATCTCTCCCGCTACCCTTCTCAGCTCTTTGATTACTCTTGCTCGCGACATCTGTGATTATAAATCAAAGATCTTCGTGACTCACAAGCGAAATGTACGGGAAGCAATCCGCCAGATTGGAATTCTTCTCATCTTCCTTGAAGAAATCCGAGACGGTCGATCGATCCTACCAGAGTCCATCGTCCTCTGCTTCTCCGAGCTCCATCTCACCTTCCAGAAGATTCGGCACCTATTAGAAGATTGCACCCGCGAAGGAGCTCGGCTATGGATTCTAATGAAGTTCCAACGCATAGTAACAGAGTTCCGGATCCTGATCAGGACGGTCGCAACAGCGCTTGATGTTCTCCCGTTGGGCTCCATTGACGTTCCAACTGAAGTAAGCGAGCTGGTTGAATTAGTAGCGAAACAGGCACAGAAGGCAAATTTTGAGGTCGACCCAGATGATGATCGAGCTGCAAAATATGTTGTTTCAATTTTAAATCAATTCGAGAATAGAATTGCACCAGATCCGATTGATCTGAGATGGGTTCTCAACCATCTGGAGATCCGAAGCTGGGACGATTGTAACAAGGAGATTAAATTCTTGGATGAAGAAATTGAATTGGAGAGCTCGAACAGAGAGAAGAGGGAAGTCGCGTTCTTAAGTAGTCTAATGGGTTTCATGAGCTATTGCCGTGGCGTGGTGTTCAATGTTGTAGATGGTCGAAGCACCAATCGTTCAGATGGAAGATGCGACAGTGAGGTGCTTAATTGCTTGAATCCGGAAGATTTCCGGTGCCCAATCTCTCTTGAGATTATGACGGATCCAGTCACCATAGCTACTGGGCAAACCTATGATCGCGCTTCGATTCTAAAATGGCTCAAGGCTGGGAACCCCATCTGCCCCAAAACAGGGGAGAAGCTAACAAGCACAGAGCTAGTGCGGAATTCAGCTCTGCAGAAGCTTATTAAGCAGTTCTGTTCTGATAATGGCATTCCAACTGCTGAACCCGGCAACCGGAATCAGGATATCACAAGGACGATATTTGCTGGCAGCCCAGCTGCAGCAGAGGCTATAACAATGCTTGCCGAGTTTCTAGTCCAAAAGCTTGCGGTCGGGACAGGTGCAGAGAGGAACAAAGCTGCGCATGAGATCCGATTGCTTGCAAAATCAAACATATTCAACAGGTCTTGCTTTGCGGAAGCGGGTTCAATCCCTTCTCTCCTAAATCTGCTTTCTTCAACAGATCCATCAACCCAAGAGAATGCAATTGCAGCACTACTGAACCTCTCAAAGCATTCCAAGTGCAAAACTATGATTGTCGAAAATGGGGGATTGATATTGATTTTGGATGTTTTAACAAAGGGGTTAAAGATGGAATCCCGGCAGATTGCAGCAGCTACACTGTTTTACCTTTCTTCAATCGAAGAGTACCGGAAATTGATCGGAGAAATACCAAAGGCAATCCCAGCGCTGGTGGAGCTAATCAGGGATGGGACCCCTCGTGGGAAGAAGAATGCCGTGGTTGCGATCTTTGGGCTTCTTTTGTTCCCCGGGAACCATCAGAGGGTGCTGGCCGTCGGAACTGTCCCATTGCTGATTGATCTTTTGACTACTTCCGAGAGAGTGGACCTTGTAACCGATTCTCTGGCAGTTCTAGCAACCTTAGCAGAGAATATTGATGGAACAGTGGCAATCCTATGCACCTCTGCTTTACCGGCACTAATGGGGATTCTACAGTCGTCCACATCTCGGACAGCGAAGGAGTACTGTGTTTCAGTTCTGCTGTCCCTATGCATCAATGGTGGGACAGAGGTAGTTGCCATTGTACAGAAGACCCCCTCAGTCATGGCGTCATTGTATTCCCTTCTCACAGATGGCACTTCTCGTGCAACTAAGAAGGCTAGTTCACTCCTTAATATTCTACATGAATTCCACAACAAAAGCTCCTCTGGCTTGTTGACTCCGGCAGTACAACAAGAACGATTTGTTCACGTGCGGACTCTGTATTTAGCTGTTACAAAGGTTTTTGTGAGCTTTTTTGCAATGGCGGCGACGGAATCCAAGGTAGCGGCTGAAGATGCCAAGATTGATCTTTTCGAAGACGACGATGAATTTGAAGAATTTGAAATCGATGAAGAGTGGGATGACAAGGAGGAAGGGAAAGAGGCGACTCAGCAGTGGGAAGATGACTGGGATGATGACGACGTAAATGATGACTTCTCTCTGCAGCTGAGGAGGGAACTAGAGAGCAACTCTGAGAAGAGCTAA 2310 0.4714 MIQKTDRRILTFPAVHPCEGISPATLLSSLITLARDICDYKSKIFVTHKRNVREAIRQIGILLIFLEEIRDGRSILPESIVLCFSELHLTFQKIRHLLEDCTREGARLWILMKFQRIVTEFRILIRTVATALDVLPLGSIDVPTEVSELVELVAKQAQKANFEVDPDDDRAAKYVVSILNQFENRIAPDPIDLRWVLNHLEIRSWDDCNKEIKFLDEEIELESSNREKREVAFLSSLMGFMSYCRGVVFNVVDGRSTNRSDGRCDSEVLNCLNPEDFRCPISLEIMTDPVTIATGQTYDRASILKWLKAGNPICPKTGEKLTSTELVRNSALQKLIKQFCSDNGIPTAEPGNRNQDITRTIFAGSPAAAEAITMLAEFLVQKLAVGTGAERNKAAHEIRLLAKSNIFNRSCFAEAGSIPSLLNLLSSTDPSTQENAIAALLNLSKHSKCKTMIVENGGLILILDVLTKGLKMESRQIAAATLFYLSSIEEYRKLIGEIPKAIPALVELIRDGTPRGKKNAVVAIFGLLLFPGNHQRVLAVGTVPLLIDLLTTSERVDLVTDSLAVLATLAENIDGTVAILCTSALPALMGILQSSTSRTAKEYCVSVLLSLCINGGTEVVAIVQKTPSVMASLYSLLTDGTSRATKKASSLLNILHEFHNKSSSGLLTPAVQQERFVHVRTLYLAVTKVFVSFFAMAATESKVAAEDAKIDLFEDDDEFEEFEIDEEWDDKEEGKEATQQWEDDWDDDDVNDDFSLQLRRELESNSEKS* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00747 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Eupl04g00747 769 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Eupl04g00747 769 SUPERFAMILY ARM repeat 366 656 IPR016024 -
Eupl04g00747 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 584 IPR000225 GO:0005515
Eupl04g00747 769 FunFam RING-type E3 ubiquitin transferase 353 666 - -
Eupl04g00747 769 SMART arm_5 572 613 IPR000225 GO:0005515
Eupl04g00747 769 SMART arm_5 530 571 IPR000225 GO:0005515
Eupl04g00747 769 SMART arm_5 446 487 IPR000225 GO:0005515
Eupl04g00747 769 SMART arm_5 489 529 IPR000225 GO:0005515
Eupl04g00747 769 SMART arm_5 404 445 IPR000225 GO:0005515
Eupl04g00747 769 Pfam DSS1/SEM1 family 707 763 IPR007834 GO:0006406|GO:0008541|GO:0043248
Eupl04g00747 769 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Eupl04g00747 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Eupl04g00747 769 PANTHER U BOX DOMAIN-CONTAINING 64 655 - -
Eupl04g00747 769 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Eupl04g00747 769 CDD RING-Ubox_PUB 274 326 IPR045210 -
Eupl04g00747 769 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Eupl04g00747 769 SMART DSS1_SEM1_2 705 764 IPR007834 GO:0006406|GO:0008541|GO:0043248
Eupl04g00747 769 MobiDBLite consensus disorder prediction 723 751 - -
Eupl04g00747 769 Pfam Armadillo/beta-catenin-like repeat 409 444 IPR000225 GO:0005515
Eupl04g00747 769 Gene3D - 531 656 IPR011989 -
Eupl04g00747 769 SUPERFAMILY RING/U-box 274 346 - -
Eupl04g00747 769 Gene3D - 357 530 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00747 Eupl-Chr4 11523314 11534523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00747 5 678 U-box Gene Family AT1G60190 45.693 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00747 - - ming:122079043 980.319