Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00741 ATGAGTATTGCTAAGGAGGTTCTGGGTGTTGCAACACAGATTATGGTTATTGCATTTGTCATCTCTGTGATTTTGTTATTTGTGGGTATTAGTGTTTTGGTCTTAATTCATGCTTGTATTGTTGGGAGGAACTTTAGGAGAGGGAACAATTCAGGTAATATGGTTGAGATGGGTAGCAGTAGCAATAGCAATAGAAGAAATAGCATGTCCCATGATGATTTAGAGAAGCTTCCTTGCTTTGATTTCAAACCAGGAGAGAATGGGAGTAGTCCTGTAGACTGTGCTGTTTGTTTGGAGAACTTCAAGATGGGTGATAAGTGTAGATTATTGCCCATCTGCAAGCACAGTTTTCATGCTCAATGTGTCGATTTGTGGTTGTTGAAGACACCCATTTGTCCTATCTGTCGAACTAGTGCCGATTCTCGGAAAGGTACATCAGTTTCGGGCGAGGAAAGTAGCCATTCGGGTGAGGTTCGATTTGAATTGAGAGAGAGAGAAGAAATTGTTGTTGGGACTCAAATTCCATCTCCTTTACACAATTCCCCTTCAGAACTTGCTGTGTGA 564 0.4131 MSIAKEVLGVATQIMVIAFVISVILLFVGISVLVLIHACIVGRNFRRGNNSGNMVEMGSSSNSNRRNSMSHDDLEKLPCFDFKPGENGSSPVDCAVCLENFKMGDKCRLLPICKHSFHAQCVDLWLLKTPICPICRTSADSRKGTSVSGEESSHSGEVRFELREREEIVVGTQIPSPLHNSPSELAV* 188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00741 187 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Eupl04g00741 187 FunFam RING-H2 finger protein ATL2K 69 142 - -
Eupl04g00741 187 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 150 - -
Eupl04g00741 187 SUPERFAMILY RING/U-box 93 142 - -
Eupl04g00741 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 145 IPR013083 -
Eupl04g00741 187 MobiDBLite consensus disorder prediction 139 153 - -
Eupl04g00741 187 Pfam Ring finger domain 93 136 IPR001841 -
Eupl04g00741 187 SMART ring_2 94 135 IPR001841 -
Eupl04g00741 187 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl04g00741 Eupl-Chr4 11484210 11485191 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00741 17 147 C3H Transcription Factor Family AT4G28890 27.857 1.07e-16 75.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00741 - - nnu:109115469 219.55