Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00738 ATGGATACCGGTCGTCTCTTCTTCGATGCATCCTGCCATGGGAACATGTTACTTCTTGGGAACGGCGATTCCGTTTTTCGAGGGCCAAGATCATTACTGAACATGGAAGAAAACTCAAGGAGGCGCCCCTTTTTCAGCTCCCCAGATGAACTGATCGAGGAAGAATTTTACGACGAACAATTGCCGGAAAAGAAGCGCCGTCTCACTCCTGAGCAGGTTCACCTCTTGGAGAAGAGCTTCGAGGCGGAGAACAAGCTGGAGCCGGAGCGTAAGACCCAGCTCGCCAAGAAGCTTGGGCTGCAGCAGAGACAAGTCGCGGTCTGGTTTCAGAACCGGAGAGCTCGTTGGAAAACTAAGCAACTCGAGAGAGATTACGATCTCCTCAAGTCCTCGTATGACTCCCTCCTCTCTGATTACGATGCCATTGTCAAGGAGAACGAGAAGTTAAAATCCCAGGTGGTGTCTCTCACTGAGAAGCTGCAGGCCAAGGAAGTGGTCGGGATGGTGGTGGTGGATCAGAAATCTGACCCACTACTTCCGGCTAATGATGCTGACATTGTCGATATCCACTTCAGTGTTAAGGCCGAAGATCGCCTGAGCTCTGGCAGCGGTGGGAGCGCCGTGGTCGATGAGGATGGACCACAGCTTGTAGATAGTGGTGATTCCTACTTCCCCAATGATGATTACCACGGATGCATGGGCCCTGTCGATGGTGTCTTATCGTCGGAGGACGATGGCAGCGACGATAACCGGAACTATTTCTCGGACGGCTTTGCAGCTGCAGAGCAGCAACAACAGGAGGAGATCACTGAGCCAATGGGTTGGTGGGTTTGGTCATAA 840 0.5238 MDTGRLFFDASCHGNMLLLGNGDSVFRGPRSLLNMEENSRRRPFFSSPDELIEEEFYDEQLPEKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQQRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSDYDAIVKENEKLKSQVVSLTEKLQAKEVVGMVVVDQKSDPLLPANDADIVDIHFSVKAEDRLSSGSGGSAVVDEDGPQLVDSGDSYFPNDDYHGCMGPVDGVLSSEDDGSDDNRNYFSDGFAAAEQQQQEEITEPMGWWVWS* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00738 279 Coils Coil 132 166 - -
Eupl04g00738 279 CDD homeodomain 64 120 IPR001356 GO:0003677
Eupl04g00738 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 211 IPR045224 GO:0003700
Eupl04g00738 279 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Eupl04g00738 279 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Eupl04g00738 279 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Eupl04g00738 279 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Eupl04g00738 279 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Eupl04g00738 279 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Eupl04g00738 279 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Eupl04g00738 279 SMART HOX_1 62 123 IPR001356 GO:0003677
Eupl04g00738 279 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Eupl04g00738 279 Gene3D - 57 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00738 Eupl-Chr4 11424164 11426983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00738 1 278 Homeobox Transcription Factor Family AT3G01470 57.951 4.50e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl04g00738 Homeodomain 7.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00738 K09338 - nnu:104593226 406.757