Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00717 ATGGCTATCAGGGGCGTCGATTTCAAGTGGTATGATGGGTTCTTCTTGTCGATGCTCGCGACGAGCGTAATCATTGTTTCGATGAATTGGAAGCGATACCATCTGTGTACACACCCTTTGCATATATGGATTGTGGTTGACTACACAACTGTCTTCGTTTTTCGGCTGCTGATGTTCGTAGACAACGGCCTTGCGGCAGGAATGGGTTTGGATCTAGGCTGGCAGCAAAGATATGCTCGCTTCTGCGGAAGAATTGCAGTTCTTTCAATTCTTTCTCTGCTACTTTACCCTTTTTTATGGGCTTGGACCATAATCGGTTCACTATGGTTCACAAGTGCTAGAAGCTGTTTGCCCGAGGAAGGTCAAAAATGGGGTTTCCTTATTTGGTTGCTTTTCAGCTATTGTGGACTTGTTTGCATTGCTTGCATCTCTATGGGAAAGTGGTTGACACGAAGGGAAGCACACTTACAACGTGCTCAACAAGGGATTCCGATTTCAGAATATGGGGTTTTGGTTGACATGATCCGAGTACCCGATTGGGCATTTGAAGCTGCAGGTCAGGAGTTGAGAGGAATGGGCCAGGATACTGCTGCATACCATCCGGGGCTTTACTTAACTACAACTCAGAGAGAAGCAGTTGAGGCACTCATTCAGGAGCTTCCTAAGTTCAGGCTAAAGGCTGTTCCAACTGATTGCAGCGAATGTCTGATCTGCCTTGAAGAGTTTCGTGAGGGGGACGAGGTTCGTGGCCTCCCTTGTGCTCACAATTTCCATGTTGTGTGCATTGACGAGTGGCTTCGGCTGAATGTGAAGTGTCCCCGGTGCCGCTGCTCCGTCTTCCCCAACCTTGATCTCAGTGCCCTTTCAAATCTCCGAGCCGATTCCGGACGACCCTCTGCCAGTGTCCTGACGACTACACGCTATGTGCGAGCCCAGCCCGCTGTTCAGAGCTATCTGTTGAGATTGCAGGGTCTGCTCCGACCAATCCGTACAGAGAATGCCGTGGCAGGCAATGATGCTGACATCGCCTTGGAAGCTGCTGAGAATGGAGGACTGGCAACAGTAACTCAGGGTCCTACAAGCACGGTGGTGCCAGCACCAGTGTTGGCATGTGTTGTTGTTGATCAGTCACCTCCTCAGCATTAA 1146 0.4991 MAIRGVDFKWYDGFFLSMLATSVIIVSMNWKRYHLCTHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDLGWQQRYARFCGRIAVLSILSLLLYPFLWAWTIIGSLWFTSARSCLPEEGQKWGFLIWLLFSYCGLVCIACISMGKWLTRREAHLQRAQQGIPISEYGVLVDMIRVPDWAFEAAGQELRGMGQDTAAYHPGLYLTTTQREAVEALIQELPKFRLKAVPTDCSECLICLEEFREGDEVRGLPCAHNFHVVCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSGRPSASVLTTTRYVRAQPAVQSYLLRLQGLLRPIRTENAVAGNDADIALEAAENGGLATVTQGPTSTVVPAPVLACVVVDQSPPQH* 382
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00717 381 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Eupl04g00717 381 Pfam Ring finger domain 234 276 IPR001841 -
Eupl04g00717 381 SUPERFAMILY RING/U-box 216 284 - -
Eupl04g00717 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Eupl04g00717 381 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Eupl04g00717 381 SMART ring_2 235 275 IPR001841 -
Eupl04g00717 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 IPR044793 GO:0004842|GO:0010182
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl04g00717 Eupl-Chr4 11024652 11034138 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00717 58 355 C3H Transcription Factor Family AT3G47990 72.425 2.82e-156 440
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00717 K16284 - nnu:104587199 681.789