Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00707 ATGACGAAAGTAGGGCGAATGAGTGGAAAAGGACCCAACGATGTTTTCACCCCTGCTCATGTTTTATGTGGCGGTGACTGGGTGCATGGAAAAGGGAGATGGAATCGTGTCGCTAAGATGACAGGTTTGAAGAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATGAATTATCTAAGCCCCAGTGTCAAGAGAGGAGATTTTTCAGAGGAAGAAGAGGACCTCATCATTAGACTCCATAATCTCCTTGGGAACAGGTGGTCACTAATTGCGGGTCGAGTGCCGGGGCGAACCGACAACCAAGTGAAGAACTACTGGAACACTCATTTGAGCAAGAAGCTCGGTTTAAAAATGGGGAAGAATAAGGTTGGTGTTTCATCACTAACAGACTCAAGAGACTGCAGAAACGGGATGAAGACTCTAAAACATACTAGAGATTCCAATGTTAAGTCTTCAACTTTTAATGACAATAGTGGAGCCATCGTTGAACGGACAGTGAACGAGGGCTTTCAGGGCTTTCAGAGCGCTGCTGAGACTTCTAATGTACAAGAATCTGTGCCGAGTGAGGGTTTTGAGAGTTCTTTTTGGTTTTCTATTGATAATTTAAACCCAAATACCTATAGCTCGAGGGAATTTCTAGACGAATATCCTTTTGATGAGGTTTGGCAAGGCTTGTAA 675 0.4415 MTKVGRMSGKGPNDVFTPAHVLCGGDWVHGKGRWNRVAKMTGLKRCGKSCRLRWMNYLSPSVKRGDFSEEEEDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSKKLGLKMGKNKVGVSSLTDSRDCRNGMKTLKHTRDSNVKSSTFNDNSGAIVERTVNEGFQGFQSAAETSNVQESVPSEGFESSFWFSIDNLNPNTYSSREFLDEYPFDEVWQGL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00707 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 58 IPR017930 -
Eupl04g00707 224 CDD SANT 67 109 IPR001005 -
Eupl04g00707 224 Gene3D - 66 151 - -
Eupl04g00707 224 CDD SANT 29 58 IPR001005 -
Eupl04g00707 224 ProSiteProfiles Myb-like domain profile. 29 58 IPR001005 -
Eupl04g00707 224 Pfam Myb-like DNA-binding domain 29 58 IPR001005 -
Eupl04g00707 224 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Eupl04g00707 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Eupl04g00707 224 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 29 173 - -
Eupl04g00707 224 SUPERFAMILY Homeodomain-like 28 105 IPR009057 -
Eupl04g00707 224 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Eupl04g00707 224 FunFam Transcription factor WER 65 136 - -
Eupl04g00707 224 Gene3D - 22 63 - -
Eupl04g00707 224 SMART sant 23 60 IPR001005 -
Eupl04g00707 224 SMART sant 63 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00707 Eupl-Chr4 10913111 10916223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00707 28 215 MYB Transcription Factor Family AT5G40330 48.421 2.81e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g00707 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00707 K09422 - nnu:104587210 231.491