Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00688 ATGGGTCTTACTTCTCTCCAAGTTTGCATGGATACGTCAGACTGGTTACAGGGTGCGGTTCACGAGGAAAGTGGAATGGATTCTTCTCCACCATCTGGGGATATGATCACATGCTCAAGACCCTTGCTAGATAGGAGACTAAGGCCCCAAAATGACCAAGCTCTCAAATGCCCAAGGTGTGACTCAACACATACCAAGTTTTGTTACTACAACAATTACAGCCTTTCTCAACCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACTAAAGGAGGGTCCCTTAGGAACATTCCTGTAGGCGGTGGCTGCAGGAAGAACAAGAGGGTGGTTGTTAAGAAATCAACTGATCAACCACTTAATCCACATCTCAATTCATCATCTCACGATGCGACTGATCTACACCTTTCATTTCCTGAGGTACAATTGTCACACCTCACTTCCTTCTTGGGGAATCCTGGAAATCTTGGAAACCCTAATCTCATGGAGAGCAAGTATAATGGCATGCTAGAGACCCCTAGACATGTTAATTTCATGGAGAGTAAGTTTGATACCATGTTAGGGAACCCTAGAAATCATGATTTCATGGGGAGTAGTGATTTAGGTCTTGTGGGTGGTCTAGGAGATGTTGGTCATGGGTTCACACCTTCTAACTTCCATGGTCTTTGCTCTCCGTTTGGAATTTCTCTAAATGGGAACGATGGGAATTTGATGGACAGTTGCCAGAGGTTAGTACTTCCATTTGAAGGAAATGATCAGGATCCACATGCAATTGAGACGAAGTCAAACAAGCAGTTCTTGTCCCTTGACTGGCATGATCAAGGTTGCTCTGAGGTTGGAAAAGATTCATTCGGGTATCTGAATGGTTTGGGATCGTGGACTGGTGTGATGAACGGCTATGCATCTTCTGCAACAAACCCATTAGTCTAG 930 0.443 MGLTSLQVCMDTSDWLQGAVHEESGMDSSPPSGDMITCSRPLLDRRLRPQNDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNIPVGGGCRKNKRVVVKKSTDQPLNPHLNSSSHDATDLHLSFPEVQLSHLTSFLGNPGNLGNPNLMESKYNGMLETPRHVNFMESKFDTMLGNPRNHDFMGSSDLGLVGGLGDVGHGFTPSNFHGLCSPFGISLNGNDGNLMDSCQRLVLPFEGNDQDPHAIETKSNKQFLSLDWHDQGCSEVGKDSFGYLNGLGSWTGVMNGYASSATNPLV* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00688 309 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Eupl04g00688 309 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Eupl04g00688 309 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Eupl04g00688 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 156 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00688 Eupl-Chr4 10437016 10438473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00688 1 309 C2C2-Dof Transcription Factor Family AT5G62940 41.867 7.32e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl04g00688 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00688 - - nnu:104587224 520.39