Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00679 ATGGATAAAAAACCCTGCAAGTCCCAAGAAACTGAGGTGAGGAAAGGACCATGGACGATGGAAGAGGACTCGATTCTGACCAACTACATCGCGAACCACGGAGAAGGTGTATGGAACTCGCTAGCTCGATCAGCAGGCCTGAAACGCACCGGAAAAAGCTGCCGCCTCCGATGGCTCAACTACTTAAGGCCAGACGTCCGGAGGGGTAATATTACACCTGAAGAACAACTTTTGATCCTCGAACTACATTCTAGGTGGGGAAACAGGTGGTCAAAAATTGCAAGGCACCTACCAGGCAGAACCGATAATGAAATAAAGAATTACTGGAGGACGAGAATTCAAAAACATATCAAGCAAGCAAAACCATTTCCCAGCCAGAAATCGGAGCTGAACCATAGTGCAAGCACAAATCACACGTCGGGCGTTGAAGATGGAGTTGAAGACTATTCCGCAACGTATACAGGAAATCTTGAGGCTTTACAGTGTCCTTTACCTACTGAATCAAATGAAAACTTCTGGAGCATGGAGGATCTATGGTCCATGCAGTTCTTTAATGGTGATTGA 564 0.461 MDKKPCKSQETEVRKGPWTMEEDSILTNYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLILELHSRWGNRWSKIARHLPGRTDNEIKNYWRTRIQKHIKQAKPFPSQKSELNHSASTNHTSGVEDGVEDYSATYTGNLEALQCPLPTESNENFWSMEDLWSMQFFNGD* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00679 187 SMART sant 14 64 IPR001005 -
Eupl04g00679 187 SMART sant 67 115 IPR001005 -
Eupl04g00679 187 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Eupl04g00679 187 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Eupl04g00679 187 Gene3D - 72 141 - -
Eupl04g00679 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Eupl04g00679 187 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Eupl04g00679 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
Eupl04g00679 187 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 128 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl04g00679 187 FunFam Myb transcription factor 15 67 - -
Eupl04g00679 187 MobiDBLite consensus disorder prediction 124 143 - -
Eupl04g00679 187 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Eupl04g00679 187 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Eupl04g00679 187 Gene3D - 12 68 - -
Eupl04g00679 187 MobiDBLite consensus disorder prediction 120 146 - -
Eupl04g00679 187 FunFam Myb-related protein 305 72 142 - -
Eupl04g00679 187 CDD SANT 72 111 IPR001005 -
Eupl04g00679 187 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00679 Eupl-Chr4 10312952 10315007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00679 7 187 MYB Transcription Factor Family AT3G01530 56.842 1.34e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g00679 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00679 K09422 - msin:131235409 306.99