Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00662 ATGGCTTTGATCGAAGGTCTCAATGCCGCTCTTTCTTTGGATGTAAAGAGGATCGACTTATTTTGCAATTACTTCCCGCTCTACCAACATATTACAAGGAGATGGAGAGTGAAGCAAGGCAAGATTGCAACATTAGTCAATCAGGTGTTTCTTCTTCAAAGAAAGTTTGAGAGTTGCCGCCCATTCTTGCTGGCACGAAATGATGTTAAGTTTGCATTTAAACTGGCAAGGGATGCAATAGATTCTCAGATCACAAGGTCTACTGAATCTAGCCATGCTCTGGAATTGAATGAGACTTGCAGCATCTGTTTGGAAGATACTGATGTCAGCCAAATGTTTTCTGTTGATGGTTGCACGCACCGCTATTGCTTTTCTTGTATGGAACAGCATGTGGAAGTCAAGGTACTTCATGGGATGGTTCCTGGATGCCCTCATGAAGGTTTTAAATCTCAGCTGAATCTCGATAGCTCTAGAACATTCTTGTCCCCCAAGTTAATTGAGATGATGAGCCAACGTATAAAGGAGGCTTCTATACCTGTAACAGAGAAACTTTATTGTCCATACCCAAAGTGCTCTGCATTGATGTGA 588 0.4201 MALIEGLNAALSLDVKRIDLFCNYFPLYQHITRRWRVKQGKIATLVNQVFLLQRKFESCRPFLLARNDVKFAFKLARDAIDSQITRSTESSHALELNETCSICLEDTDVSQMFSVDGCTHRYCFSCMEQHVEVKVLHGMVPGCPHEGFKSQLNLDSSRTFLSPKLIEMMSQRIKEASIPVTEKLYCPYPKCSALM* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00662 195 SUPERFAMILY RING/U-box 98 179 - -
Eupl04g00662 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 179 IPR013083 -
Eupl04g00662 195 Pfam Zinc finger, C3HC4 type (RING finger) 100 144 IPR018957 GO:0046872
Eupl04g00662 195 FunFam RBR-type E3 ubiquitin transferase 95 180 - -
Eupl04g00662 195 ProSiteProfiles TRIAD supradomain profile. 96 195 IPR044066 -
Eupl04g00662 195 Gene3D - 1 88 IPR036397 GO:0003676
Eupl04g00662 195 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 82 192 IPR031127 GO:0004842|GO:0016567
Eupl04g00662 195 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Eupl04g00662 195 ProSiteProfiles Zinc finger RING-type profile. 100 144 IPR001841 -
Eupl04g00662 195 Pfam Reverse transcriptase-like 1 79 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00662 Eupl-Chr4 10038384 10095107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00662 2 195 C3H Transcription Factor Family AT2G19610 36.224 1.19e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00662 - - nnu:104594769 300.441