Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00659 ATGGCTGTAACGGCATCTGGTTCCTCCAATGGTCCACGCTATGCACCAGAAGACCCTACACTCCCCAAGCCATGGAAGGGCCTAGTTGATGGGAGCACTGGGTATCTTTACTTTTGGAATCCAGTTACCAACGTCACCCAGTACGAGAGGCCTGTAGCGTCCTCAGGACAGCCCCCATCACCTGCTCCTTCAAAGTCTGCTTCGGCGCCTATAAGTTCTTCAGTTCAGGTTCATCAATCTTCTCAAGGACAACAACATCATGATAGTAGTAAGGAGGAAGATGCTCGATATAATGAAGGTAGTAATGTTGGGTCGAAGCTTGCCGCAATTTCTCGAGGAAGGGATCATCTGAGTGTGAAAGGTGGCAGTGGTCTTTCGCATGATGTCCCAAATGGGTCAACTACTGTTGGAAGTGGAGGATCTAATATGTACAACCATGGGTCTAGTGCACAGACTTTAAAATCATCTGCTAGAGCACATGGATCCAATATGGGAAGTGTTTCATCCGCGGAGTCCTATCGCCGTCAACATGAAATAACTGTTACTGGAGATAATGTACCCCCACCATTTATGTCGTTTGAATCTTGTGGTTTTCCTCCGGAGATTCTTAAAGAGGTGCACAATGCTGGGTTCCCTGCTCCAACACCAATTCAGGCCCAGTCATGGCCAGTTGCTCTACAGAATCGTGATATCGTAGCCGTTGCAAAGACAGGCTCGGGGAAAACCTTGGGTTACCTTATTCCAGGGTTTATCCATCTCAAACGCTGCTGTAACAATTCTCAGATGGGTCCAACTGTGCTAGTACTATCACCGACGAGGGAGTTGGCTACACAGATACAAGATGAGGCTGTGAAGTTCAGCCGGTCGTCAAGAATTTCGTGCACGTGTTTGTATGGAGGAGCCCCAAAGGGTCCCCAGCTAAGAGATCTAGAACGGGGAGCAGATATTGTGGTTGCAACTCCTGGCCGACTGAACGATATTCTGGAGATGAGAAAAGTCAACCTCCGTCAGGTTTCATACTTGGTGCTTGACGAGGCAGACCGCATGCTGGATATGGGTTTTGAGCCTCAGATTCGGAAGATTGTGAAGGAAGTACCTGCCCGCCGCCAGACCCTCATGTACACTGCAACGTGGCCTAAGGAAGTCCGTAAAATTGCTGCCGAGTTACTTGTTAATCCTGCTCAAATTAACATTGGCAGCATAGATGAGCTTGTTGCCAACAAGTCTATCACCCAGTATGTTGAAGTTGTTGCACACATGGAGAAACAGCGACGGTTGGAGCAGATATTGCGATCTCAAGAACCAGGCTCTAAAGTCATAATCTTCTGCTCGACCAAGAAGATGTGTGACCAGCTTGCTCGTACCATTACTCGCCAATTTGGAGCTGCTGCCATTCATGGAGACAAATCTCAGGGTGAGAGGGATTATGTGTTGAACCAGTTCCGCACTGGGAAGTCTCCCATACTTGTAGCCACTGATGTTGCGGCTCGAGGACTGGACATCAAAGACATCAGGGTCGTCGTCAACTATGACTTCCCTACTGGAATAGAAGACTATGTTCACAGGATTGGAAGGACTGGAAGGGCGGGCGCCACTGGAGTAGCTCACACATTCTTCTGTGACCAGGACGCGAAGCATGCCTCTGATCTCATCAAGGTTCTGGAAGGGGCAAACCAGCGAGTACCTCCGGAGATCCGTGACATGGTGGGACGTGGTGGTGGGATGGGCAGAAATCGTCGCCAGTGGGGTTCGGGCTCAGGTGGTCGTGACGGAGGCCGTGCTGGCGGTAATGATTCTAGTTATGGTGGGAGGGGCAGCCGCGGAGTTCCACCGTCTTGGAGCAGGTCAGAGAGAGGCCATGGTGGTCGTGGATATGACCGTGAGCCTCGTGACAGGTATGATGACGGTCACGATGAGTCATTGCATGGGAGGTACGATAAGACCTACCCTGCCAATAATAGTGATCTCCATGTTGGAGATAGGGACCGAGTTCGCAGCCAAAGCCCGAACGGGGGGAATGGGTGGGGCCACCCCCAGAGCAGAAGCCCAAGCAAAACCTGGAACCGGAGTCGAAGCCGCAGTCGCAGCCTTGACAGGTATGGTGGTGCCCCATCAGTACGAGGACATTCTCCAGTGCCCAGGAGAGATGCTTCACCAAATCGCTCACCTCCACCACATCAGCAGCAACAGCGGAAGAGTCCACTGCATGAAAGGTCACGATCCCCATCTGATGGGAGGGGGAACACAAGGGGGTCAGATGATCCCCCACAGCAGAAGTGGGGAAGGGGGGATGGAGAATTTGCCAATGGTCAACCCTTGCCTTACCATGGTGGGGAGGAAGAGGAGGAAGGCATGATTCCGGAAGATGAAGAGGGCATGATTCCGGCTGATGACAGTGATAGGAATTCTCCATCGGTGGGATGGAGAAACCCGATAATTAACTGA 2445 0.5141 MAVTASGSSNGPRYAPEDPTLPKPWKGLVDGSTGYLYFWNPVTNVTQYERPVASSGQPPSPAPSKSASAPISSSVQVHQSSQGQQHHDSSKEEDARYNEGSNVGSKLAAISRGRDHLSVKGGSGLSHDVPNGSTTVGSGGSNMYNHGSSAQTLKSSARAHGSNMGSVSSAESYRRQHEITVTGDNVPPPFMSFESCGFPPEILKEVHNAGFPAPTPIQAQSWPVALQNRDIVAVAKTGSGKTLGYLIPGFIHLKRCCNNSQMGPTVLVLSPTRELATQIQDEAVKFSRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRKVNLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAAELLVNPAQINIGSIDELVANKSITQYVEVVAHMEKQRRLEQILRSQEPGSKVIIFCSTKKMCDQLARTITRQFGAAAIHGDKSQGERDYVLNQFRTGKSPILVATDVAARGLDIKDIRVVVNYDFPTGIEDYVHRIGRTGRAGATGVAHTFFCDQDAKHASDLIKVLEGANQRVPPEIRDMVGRGGGMGRNRRQWGSGSGGRDGGRAGGNDSSYGGRGSRGVPPSWSRSERGHGGRGYDREPRDRYDDGHDESLHGRYDKTYPANNSDLHVGDRDRVRSQSPNGGNGWGHPQSRSPSKTWNRSRSRSRSLDRYGGAPSVRGHSPVPRRDASPNRSPPPHQQQQRKSPLHERSRSPSDGRGNTRGSDDPPQQKWGRGDGEFANGQPLPYHGGEEEEEGMIPEDEEGMIPADDSDRNSPSVGWRNPIIN* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00659 814 Gene3D - 401 571 IPR027417 -
Eupl04g00659 814 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Eupl04g00659 814 SMART ww_5 20 53 IPR001202 GO:0005515
Eupl04g00659 814 MobiDBLite consensus disorder prediction 666 690 - -
Eupl04g00659 814 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Eupl04g00659 814 MobiDBLite consensus disorder prediction 562 814 - -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 154 176 - -
Eupl04g00659 814 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 342 350 IPR000629 -
Eupl04g00659 814 Gene3D - 16 57 - -
Eupl04g00659 814 Pfam DEAD/DEAH box helicase 215 385 IPR011545 GO:0003676|GO:0005524
Eupl04g00659 814 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 569 IPR001650 -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 118 142 - -
Eupl04g00659 814 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 191 219 IPR014014 GO:0003724
Eupl04g00659 814 CDD WW 22 52 IPR001202 GO:0005515
Eupl04g00659 814 SMART ultradead3 210 413 IPR014001 -
Eupl04g00659 814 FunFam probable ATP-dependent RNA helicase DDX17 159 399 - -
Eupl04g00659 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 546 IPR027417 -
Eupl04g00659 814 CDD SF2_C_DEAD 410 539 - -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 50 84 - -
Eupl04g00659 814 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 155 569 - -
Eupl04g00659 814 SUPERFAMILY WW domain 16 53 IPR036020 GO:0005515
Eupl04g00659 814 MobiDBLite consensus disorder prediction 85 99 - -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 619 645 - -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 127 142 - -
Eupl04g00659 814 FunFam ATP-dependent RNA helicase RhlB 401 572 - -
Eupl04g00659 814 SMART helicmild6 450 530 IPR001650 -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 1 26 - -
Eupl04g00659 814 Gene3D - 164 400 IPR027417 -
Eupl04g00659 814 Pfam Helicase conserved C-terminal domain 422 530 IPR001650 -
Eupl04g00659 814 Pfam WW domain 21 51 IPR001202 GO:0005515
Eupl04g00659 814 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 396 IPR014001 -
Eupl04g00659 814 MobiDBLite consensus disorder prediction 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00659 Eupl-Chr4 10011228 10018422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00659 189 569 Eukaryotic Initiation Factors Gene Family AT3G19760 34.115 1.40e-67 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00659 K12823 - nnu:104591406 1011.52