Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl04g00659 | ATGGCTGTAACGGCATCTGGTTCCTCCAATGGTCCACGCTATGCACCAGAAGACCCTACACTCCCCAAGCCATGGAAGGGCCTAGTTGATGGGAGCACTGGGTATCTTTACTTTTGGAATCCAGTTACCAACGTCACCCAGTACGAGAGGCCTGTAGCGTCCTCAGGACAGCCCCCATCACCTGCTCCTTCAAAGTCTGCTTCGGCGCCTATAAGTTCTTCAGTTCAGGTTCATCAATCTTCTCAAGGACAACAACATCATGATAGTAGTAAGGAGGAAGATGCTCGATATAATGAAGGTAGTAATGTTGGGTCGAAGCTTGCCGCAATTTCTCGAGGAAGGGATCATCTGAGTGTGAAAGGTGGCAGTGGTCTTTCGCATGATGTCCCAAATGGGTCAACTACTGTTGGAAGTGGAGGATCTAATATGTACAACCATGGGTCTAGTGCACAGACTTTAAAATCATCTGCTAGAGCACATGGATCCAATATGGGAAGTGTTTCATCCGCGGAGTCCTATCGCCGTCAACATGAAATAACTGTTACTGGAGATAATGTACCCCCACCATTTATGTCGTTTGAATCTTGTGGTTTTCCTCCGGAGATTCTTAAAGAGGTGCACAATGCTGGGTTCCCTGCTCCAACACCAATTCAGGCCCAGTCATGGCCAGTTGCTCTACAGAATCGTGATATCGTAGCCGTTGCAAAGACAGGCTCGGGGAAAACCTTGGGTTACCTTATTCCAGGGTTTATCCATCTCAAACGCTGCTGTAACAATTCTCAGATGGGTCCAACTGTGCTAGTACTATCACCGACGAGGGAGTTGGCTACACAGATACAAGATGAGGCTGTGAAGTTCAGCCGGTCGTCAAGAATTTCGTGCACGTGTTTGTATGGAGGAGCCCCAAAGGGTCCCCAGCTAAGAGATCTAGAACGGGGAGCAGATATTGTGGTTGCAACTCCTGGCCGACTGAACGATATTCTGGAGATGAGAAAAGTCAACCTCCGTCAGGTTTCATACTTGGTGCTTGACGAGGCAGACCGCATGCTGGATATGGGTTTTGAGCCTCAGATTCGGAAGATTGTGAAGGAAGTACCTGCCCGCCGCCAGACCCTCATGTACACTGCAACGTGGCCTAAGGAAGTCCGTAAAATTGCTGCCGAGTTACTTGTTAATCCTGCTCAAATTAACATTGGCAGCATAGATGAGCTTGTTGCCAACAAGTCTATCACCCAGTATGTTGAAGTTGTTGCACACATGGAGAAACAGCGACGGTTGGAGCAGATATTGCGATCTCAAGAACCAGGCTCTAAAGTCATAATCTTCTGCTCGACCAAGAAGATGTGTGACCAGCTTGCTCGTACCATTACTCGCCAATTTGGAGCTGCTGCCATTCATGGAGACAAATCTCAGGGTGAGAGGGATTATGTGTTGAACCAGTTCCGCACTGGGAAGTCTCCCATACTTGTAGCCACTGATGTTGCGGCTCGAGGACTGGACATCAAAGACATCAGGGTCGTCGTCAACTATGACTTCCCTACTGGAATAGAAGACTATGTTCACAGGATTGGAAGGACTGGAAGGGCGGGCGCCACTGGAGTAGCTCACACATTCTTCTGTGACCAGGACGCGAAGCATGCCTCTGATCTCATCAAGGTTCTGGAAGGGGCAAACCAGCGAGTACCTCCGGAGATCCGTGACATGGTGGGACGTGGTGGTGGGATGGGCAGAAATCGTCGCCAGTGGGGTTCGGGCTCAGGTGGTCGTGACGGAGGCCGTGCTGGCGGTAATGATTCTAGTTATGGTGGGAGGGGCAGCCGCGGAGTTCCACCGTCTTGGAGCAGGTCAGAGAGAGGCCATGGTGGTCGTGGATATGACCGTGAGCCTCGTGACAGGTATGATGACGGTCACGATGAGTCATTGCATGGGAGGTACGATAAGACCTACCCTGCCAATAATAGTGATCTCCATGTTGGAGATAGGGACCGAGTTCGCAGCCAAAGCCCGAACGGGGGGAATGGGTGGGGCCACCCCCAGAGCAGAAGCCCAAGCAAAACCTGGAACCGGAGTCGAAGCCGCAGTCGCAGCCTTGACAGGTATGGTGGTGCCCCATCAGTACGAGGACATTCTCCAGTGCCCAGGAGAGATGCTTCACCAAATCGCTCACCTCCACCACATCAGCAGCAACAGCGGAAGAGTCCACTGCATGAAAGGTCACGATCCCCATCTGATGGGAGGGGGAACACAAGGGGGTCAGATGATCCCCCACAGCAGAAGTGGGGAAGGGGGGATGGAGAATTTGCCAATGGTCAACCCTTGCCTTACCATGGTGGGGAGGAAGAGGAGGAAGGCATGATTCCGGAAGATGAAGAGGGCATGATTCCGGCTGATGACAGTGATAGGAATTCTCCATCGGTGGGATGGAGAAACCCGATAATTAACTGA | 2445 | 0.5141 | MAVTASGSSNGPRYAPEDPTLPKPWKGLVDGSTGYLYFWNPVTNVTQYERPVASSGQPPSPAPSKSASAPISSSVQVHQSSQGQQHHDSSKEEDARYNEGSNVGSKLAAISRGRDHLSVKGGSGLSHDVPNGSTTVGSGGSNMYNHGSSAQTLKSSARAHGSNMGSVSSAESYRRQHEITVTGDNVPPPFMSFESCGFPPEILKEVHNAGFPAPTPIQAQSWPVALQNRDIVAVAKTGSGKTLGYLIPGFIHLKRCCNNSQMGPTVLVLSPTRELATQIQDEAVKFSRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRKVNLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAAELLVNPAQINIGSIDELVANKSITQYVEVVAHMEKQRRLEQILRSQEPGSKVIIFCSTKKMCDQLARTITRQFGAAAIHGDKSQGERDYVLNQFRTGKSPILVATDVAARGLDIKDIRVVVNYDFPTGIEDYVHRIGRTGRAGATGVAHTFFCDQDAKHASDLIKVLEGANQRVPPEIRDMVGRGGGMGRNRRQWGSGSGGRDGGRAGGNDSSYGGRGSRGVPPSWSRSERGHGGRGYDREPRDRYDDGHDESLHGRYDKTYPANNSDLHVGDRDRVRSQSPNGGNGWGHPQSRSPSKTWNRSRSRSRSLDRYGGAPSVRGHSPVPRRDASPNRSPPPHQQQQRKSPLHERSRSPSDGRGNTRGSDDPPQQKWGRGDGEFANGQPLPYHGGEEEEEGMIPEDEEGMIPADDSDRNSPSVGWRNPIIN* | 815 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl04g00659 | 814 | Gene3D | - | 401 | 571 | IPR027417 | - | |
Eupl04g00659 | 814 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 19 | 53 | IPR001202 | GO:0005515 | |
Eupl04g00659 | 814 | SMART | ww_5 | 20 | 53 | IPR001202 | GO:0005515 | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 666 | 690 | - | - | |
Eupl04g00659 | 814 | ProSitePatterns | WW/rsp5/WWP domain signature. | 25 | 51 | IPR001202 | GO:0005515 | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 562 | 814 | - | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 154 | 176 | - | - | |
Eupl04g00659 | 814 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 342 | 350 | IPR000629 | - | |
Eupl04g00659 | 814 | Gene3D | - | 16 | 57 | - | - | |
Eupl04g00659 | 814 | Pfam | DEAD/DEAH box helicase | 215 | 385 | IPR011545 | GO:0003676|GO:0005524 | |
Eupl04g00659 | 814 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 425 | 569 | IPR001650 | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 118 | 142 | - | - | |
Eupl04g00659 | 814 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 191 | 219 | IPR014014 | GO:0003724 | |
Eupl04g00659 | 814 | CDD | WW | 22 | 52 | IPR001202 | GO:0005515 | |
Eupl04g00659 | 814 | SMART | ultradead3 | 210 | 413 | IPR014001 | - | |
Eupl04g00659 | 814 | FunFam | probable ATP-dependent RNA helicase DDX17 | 159 | 399 | - | - | |
Eupl04g00659 | 814 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 263 | 546 | IPR027417 | - | |
Eupl04g00659 | 814 | CDD | SF2_C_DEAD | 410 | 539 | - | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 50 | 84 | - | - | |
Eupl04g00659 | 814 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 155 | 569 | - | - | |
Eupl04g00659 | 814 | SUPERFAMILY | WW domain | 16 | 53 | IPR036020 | GO:0005515 | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 85 | 99 | - | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 619 | 645 | - | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 127 | 142 | - | - | |
Eupl04g00659 | 814 | FunFam | ATP-dependent RNA helicase RhlB | 401 | 572 | - | - | |
Eupl04g00659 | 814 | SMART | helicmild6 | 450 | 530 | IPR001650 | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Eupl04g00659 | 814 | Gene3D | - | 164 | 400 | IPR027417 | - | |
Eupl04g00659 | 814 | Pfam | Helicase conserved C-terminal domain | 422 | 530 | IPR001650 | - | |
Eupl04g00659 | 814 | Pfam | WW domain | 21 | 51 | IPR001202 | GO:0005515 | |
Eupl04g00659 | 814 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 222 | 396 | IPR014001 | - | |
Eupl04g00659 | 814 | MobiDBLite | consensus disorder prediction | 50 | 102 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl04g00659 | Eupl-Chr4 | 10011228 | 10018422 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl04g00659 | 189 | 569 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.115 | 1.40e-67 | 228 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl04g00659 | K12823 | - | nnu:104591406 | 1011.52 |