Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00658 ATGGAGTTTGATACGAATTACAGAGATGATCTGGCTTACAAGCCGACATTTTTGTCGGAGAATTACTTCAAACCCGAAATCGGAGATGGGTTTTCTTTAGAAGCATGTTCATCTCAAGGTTTTTTTCAGGAATTTCCTCATTTTGATCAGTTTCCTGTTGATGGGTTGTCCTTGAATTCAAAATTCGGGGTCTCGGCTCCCTACAACCCATTTGATGCTTTCACAACTGGGTGTTCATCAAATTTCGATGTATGCGAATATAAGCCTTTTGCAGAAGAAGCTGGTAATGGGTTCATTAATGAGAAATTTCAGAATACAACCTTCTTAAATTGTCAGCAGAGAACTCCAACAGCGGTGATAGAGCAGGATCGGAGCCGCCCACCGTTGAATTTCCGAGAATTCCAATCGGCGAACTTCGGGATACCGGATGAGATTTCATGCATAACTACAGACAACAGATTTTATAGGGAAGCAGCTGGTTTGAATAAGAAAAACATGCAGATGAAGACTGGCAAAGGTCCTAAGAAATCTAATGCAGTTAAAGGGCAATGGACCATTGAAGAAGATAGATTACTGGTGCACTTGGTTGAACAGTTTGGAGTGAGGAAATGGTCTCATATTGCTCAGATGTTGAATGGGAGGATAGGGAAGCAGTGTAGAGAGAGATGGCACAACCATTTAAGACCTAACATCAAGAAAGATACATGGACTGAAGAAGAGGATAAAATTCTAATTCAGGCCCATGCAGAAATAGGAAATAAATGGGCAGAAATTGCAAAGAGATTGACCGGAAGAACTGAGAATTCCATAAAGAATCACTGGAATGCAACCAGACGAAGGCAATTCTCAAGGCGAAGATGCCGAAGCTCGAAATACCCAAAATCAAGCTCCCTCCTTCAGAACTACATCAAGAGCTTGACTTCAAATTCAACTGGGGCTGCTGATTATCAGAAAAACACATTTACCAACTCCAACATGCCGATAGCTAATCCTATGGTTAGACCAGCCCCAGGTCAACCCGAGCAATCTGATTTTTGCCCAAGTGATCGGTTAGTCCCGAATTTTGATTTTAATGAGGCCCCCGATTTTATTTTCGACACGAAGATGTTTCCTGAGAGATGCAGTATCGGATCTCTGTTCGATGAGATTCCTTGTGCTTCTTTTGTTGATGAGAGAAGTTTGGAGATGGAAATGCCATTGGATATGTCTTCATTGATGCAGTGTGAAGTGAAGAAGGAGATGGATTTGGTGGAGATGATCTCTCAAGCCAATCTCTAA 1278 0.4178 MEFDTNYRDDLAYKPTFLSENYFKPEIGDGFSLEACSSQGFFQEFPHFDQFPVDGLSLNSKFGVSAPYNPFDAFTTGCSSNFDVCEYKPFAEEAGNGFINEKFQNTTFLNCQQRTPTAVIEQDRSRPPLNFREFQSANFGIPDEISCITTDNRFYREAAGLNKKNMQMKTGKGPKKSNAVKGQWTIEEDRLLVHLVEQFGVRKWSHIAQMLNGRIGKQCRERWHNHLRPNIKKDTWTEEEDKILIQAHAEIGNKWAEIAKRLTGRTENSIKNHWNATRRRQFSRRRCRSSKYPKSSSLLQNYIKSLTSNSTGAADYQKNTFTNSNMPIANPMVRPAPGQPEQSDFCPSDRLVPNFDFNEAPDFIFDTKMFPERCSIGSLFDEIPCASFVDERSLEMEMPLDMSSLMQCEVKKEMDLVEMISQANL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00658 425 SMART sant 180 229 IPR001005 -
Eupl04g00658 425 SMART sant 232 280 IPR001005 -
Eupl04g00658 425 PANTHER MYB PROTEIN-RELATED 164 308 - -
Eupl04g00658 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 282 IPR017930 -
Eupl04g00658 425 Gene3D - 234 301 - -
Eupl04g00658 425 CDD SANT 184 227 IPR001005 -
Eupl04g00658 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 231 IPR017930 -
Eupl04g00658 425 FunFam Transcriptional activator Myb isoform A 180 233 - -
Eupl04g00658 425 CDD SANT 235 275 IPR001005 -
Eupl04g00658 425 ProSiteProfiles Myb-like domain profile. 228 278 IPR001005 -
Eupl04g00658 425 FunFam Transcription factor MYB119 234 298 - -
Eupl04g00658 425 SUPERFAMILY Homeodomain-like 179 274 IPR009057 -
Eupl04g00658 425 Pfam Myb-like DNA-binding domain 184 241 - -
Eupl04g00658 425 Gene3D - 180 232 - -
Eupl04g00658 425 ProSiteProfiles Myb-like domain profile. 176 227 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00658 Eupl-Chr4 10004500 10006436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00658 134 384 MYB Transcription Factor Family AT4G18770 54.023 5.64e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g00658 Myb_DNA-bind_6 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00658 K09422 - ming:122078048 514.227