Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00653 ATGGCTACATGCAACCACCTCCTTGATCTCCAAGAGCAGATCTGCTATGTACAATGTGGTTTCTGCACCACCATTCTACTGGTGAGTGTCCCATGTAGCAGTTTGTTGAAGGTGGTTACTGTTAGATGTGGCCACTGTGCAGGCCTCCTCTCCGTAAACATGATGAGAGCTTCATTTGTTCCTCTGCAGCTTCTTGCTTCCTTCAACGACGACGACGAGCAAAAACAAGAAGTTATCCATGAAGAAGTCGAAGCTCCAAATGCCGACGATAGCCAAAACCCACCGATTGCCTCTTACGACAATGACGAAGAAGAGAAAACCCCAGCGATCCCTGTCGTTAACAAACCCCCAGAGAAGAGGCAACGAGCTCCGTCCGCTTATAATCGCTTCATAAAGGAAGAGATACAGAGACTCAAAGCCAGAGAACCCAAAATCACCCACAGGGAAGCCTTCAGTACTGCTGCTAAAAATTGGGCCCATTTTCCTCGAATTCAGCATAAAGAAGAGGGAGAGAGCTGCAGCCATGGAGGGGGAAAGGTGACAAGAAACCCAGATGTTGACGAGGTCAATGTACATGAAGGTTTTCGTGAAAGAAAGGCCTCAAGAAGCTCTTGGGGATGTGGTTTCTCTACTTGA 636 0.478 MATCNHLLDLQEQICYVQCGFCTTILLVSVPCSSLLKVVTVRCGHCAGLLSVNMMRASFVPLQLLASFNDDDEQKQEVIHEEVEAPNADDSQNPPIASYDNDEEEKTPAIPVVNKPPEKRQRAPSAYNRFIKEEIQRLKAREPKITHREAFSTAAKNWAHFPRIQHKEEGESCSHGGGKVTRNPDVDEVNVHEGFRERKASRSSWGCGFST* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00653 211 PANTHER PROTEIN YABBY 6-RELATED 11 171 IPR006780 GO:0007275
Eupl04g00653 211 FunFam Axial regulator YABBY 4 109 176 - -
Eupl04g00653 211 MobiDBLite consensus disorder prediction 168 200 - -
Eupl04g00653 211 Gene3D High mobility group box domain 102 170 IPR036910 -
Eupl04g00653 211 Pfam YABBY protein 10 166 IPR006780 GO:0007275
Eupl04g00653 211 CDD HMG-box_SF 122 158 - -
Eupl04g00653 211 MobiDBLite consensus disorder prediction 168 211 - -
Eupl04g00653 211 MobiDBLite consensus disorder prediction 82 123 - -
Eupl04g00653 211 SUPERFAMILY HMG-box 112 162 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00653 Eupl-Chr4 9951239 9954959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00653 2 206 C2C2-YABBY Transcription Factor Family AT1G23420 55.046 4.35e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Eupl04g00653 YABBY 5.3e-66 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00653 K25796 - ming:122076000 312.768