Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00652 ATGCAGATCTTCGTAAAAACCCTAACTGGGAAAACCATAACCCTAGAGGTCGAATCCTCAGATACGATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGATCAACAGCGCCTGATCTTCGCCGGGAAACAGCTCGAGGACGGCCGGACCTTGGCCGACTATAACATTCAGAAAGAATCAACTCTTCACCTTGTTCTTCGTCTCCGAGGAGGAGCGAAGAAGCGAAAGAAGAAAACCTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTGAAGCTCGCGGTGTTGCAGTTCTACAAGGTTGATGACTCGGGGAAGGTCCAGAAGCTTAGGAAGGAGTGCCCGAACCAGGAGTGCGGTGCCGGGACGTTCATGGCGAATCACTTTGATCGACATTATTGTGGGAAGTGTGGTTTGACTTACGTTTACCAGAAGGCTGGCGGAGATTAG 471 0.5053 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQKLRKECPNQECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00652 156 Gene3D - 81 154 IPR038582 -
Eupl04g00652 156 Gene3D - 1 80 - -
Eupl04g00652 156 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Eupl04g00652 156 SMART ubq_7 1 72 IPR000626 GO:0005515
Eupl04g00652 156 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Eupl04g00652 156 PANTHER UBIQUITIN 1 89 - -
Eupl04g00652 156 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Eupl04g00652 156 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Eupl04g00652 156 CDD Ubl_ubiquitin 1 76 - -
Eupl04g00652 156 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Eupl04g00652 156 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Eupl04g00652 156 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Eupl04g00652 156 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Eupl04g00652 156 PRINTS Ubiquitin signature 11 31 IPR019956 -
Eupl04g00652 156 PRINTS Ubiquitin signature 53 74 IPR019956 -
Eupl04g00652 156 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00652 Eupl-Chr4 9945564 9946391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00652 1 154 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 94.805 7.56e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00652 K02977 - qsa:O6P43_033183 277.33