Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00645 ATGTTTCTCTTGCAGGTGTTAGTGGTTCTCGTCTTTGAAGAGTACAAAGCCGTGGAGACATCATCAAAACCAGTGTTGGGTGTGGAGATTCACTTGTGGTTGTGGACGGGCGGAGAGTTTGTTGGTGTTTCCAGAGGCAGCAGAGAAGTGGGTGGGGTAACTGTAGTTGTCAGAGGTGGTGGAGAGGCGTCTGGGTTAACTGGAGTTGTCGGAGGCGACGGAGAGGCTAGAGGCGCGAGGATCAAGGTCCATGAGCTCCGAACCAAATCTAAACCCGAGCTTCTGAGCCAGCTCAATGAGCTCAAGGCCGAGCTTGCGTTGCTCCGAGTTGCTAAGGTCACTGGAGGTGCTCCTAACAAGCTCTCGAAGATTAAGGTGGTTAGGCTGTCCATTGCACGTGTGCTTACTGTTACCTCCCAGAAGCAAAAGGCTGCATTGAGAGAAGTGTACAAGAAGAAGAAGTTTCTGCCATTGGATCTTAGGCCAAAGAAGACCCGTGCAATCAGGAAGCGCCTCACAAAACATCAGGTTGCCCATGGGAAGGCAGGAATAGTAAGATAG 561 0.5116 MFLLQVLVVLVFEEYKAVETSSKPVLGVEIHLWLWTGGEFVGVSRGSREVGGVTVVVRGGGEASGLTGVVGGDGEARGARIKVHELRTKSKPELLSQLNELKAELALLRVAKVTGGAPNKLSKIKVVRLSIARVLTVTSQKQKAALREVYKKKKFLPLDLRPKKTRAIRKRLTKHQVAHGKAGIVR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00645 186 Coils Coil 91 111 - -
Eupl04g00645 186 Pfam Ribosomal L29 protein 85 141 IPR001854 GO:0003735|GO:0005840|GO:0006412
Eupl04g00645 186 CDD Ribosomal_L29_HIP 85 141 - -
Eupl04g00645 186 PANTHER 60S RIBOSOMAL PROTEIN L35 79 177 IPR045059 GO:0000463|GO:0022625
Eupl04g00645 186 Gene3D - 79 154 IPR036049 GO:0003735|GO:0005840|GO:0006412
Eupl04g00645 186 NCBIfam 50S ribosomal protein L29 85 141 IPR001854 GO:0003735|GO:0005840|GO:0006412
Eupl04g00645 186 Hamap 50S ribosomal protein L29 [rpmC]. 81 141 IPR001854 GO:0003735|GO:0005840|GO:0006412
Eupl04g00645 186 Gene3D - 155 182 - -
Eupl04g00645 186 SUPERFAMILY Ribosomal protein L29 (L29p) 81 142 IPR036049 GO:0003735|GO:0005840|GO:0006412
Eupl04g00645 186 FunFam 60S ribosomal protein L35 78 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00645 Eupl-Chr4 9875019 9887911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00645 79 178 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 84.000 1.55e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00645 K02918 - nnu:104593160 174.481