Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00634 ATGATGGAGGACTTGTATGGTCTTCATCCCACGGCGAATTACTCAGAACAGGTATCAATGGCGCCGGGAAATTTAGTTTCTCCGTCGGATTACCAGACCTTGCTCAGTTCCGGAGCTTTTCGCGATCGGCTTCCGATCTTTGGATCGGATCAGTTGTTCTCTGCAGCGGCTTCGGTGATATCTGAGAACACTTCGATGACGCCTGAAATTCAAGGTAGAGGAGGAGGTGGACGACGAGAAGACGAGATGTCGAGTACGATTAAAGCGAAAATCGCTTCTCATCCTCGTTATCCTAGATTGCTCGAAGCTTTCATCGATTGCCAGAAGGTGGGAGCTCCGCCGGAGATAGCATGTCTGTTAGACGAAATCCGGCAAGAAAACGACTTCTGTAAGAGAAACGCTGTTTCGACTCTCATAGGCTCCGATCCCGAGCTCGACGAGTTCATGGAAACTTACTGTAATATATTGGTGAAGTATAAATCGGATCTCGCAAGGCCTTTCGATGAAGCAACCACCTTCTTGAACAAGATAGAGATGCAGCTCACCAATCTCAGCAAGGGAGCTTCCAGAAGCTGCGTTTCGGATGAAGCTGCAGGATCATCGGAGGAGGATTTCAGTGGAGGTGAGATAGATGTTCAAGAGGTTCCCCAAAGAGGCGAAGACCGAGATCTTAAGGATAAGCTCTTGCGTAAATATAGTGGGTATATTAGTAGCCTGAAGCAGGAATTCTCGAAGAAGAAGAAGAAGGGAAAGCTACCAAAAGAAGCAAGGCAAACACTCCTTGACTGGTGGAGCATTCATTATAAATGGCCATACCCAACGGAAGCTGATAAGATTGCACTGGCCGAGTCCACGGGCCTAGACCAGAAACAAATAAACAATTGGTTTATTAATCAGCGAAAGCGTCACTGGAAACCATCGGAGAACATGCAGTTCACTGTCATGGACAGTCTTTCTGGATCCTTTTTTATGGATGACTGA 981 0.4699 MMEDLYGLHPTANYSEQVSMAPGNLVSPSDYQTLLSSGAFRDRLPIFGSDQLFSAAASVISENTSMTPEIQGRGGGGRREDEMSSTIKAKIASHPRYPRLLEAFIDCQKVGAPPEIACLLDEIRQENDFCKRNAVSTLIGSDPELDEFMETYCNILVKYKSDLARPFDEATTFLNKIEMQLTNLSKGASRSCVSDEAAGSSEEDFSGGEIDVQEVPQRGEDRDLKDKLLRKYSGYISSLKQEFSKKKKKGKLPKEARQTLLDWWSIHYKWPYPTEADKIALAESTGLDQKQINNWFINQRKRHWKPSENMQFTVMDSLSGSFFMDD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00634 326 FunFam Homeobox protein knotted-1-like 2 248 310 - -
Eupl04g00634 326 SUPERFAMILY Homeodomain-like 244 320 IPR009057 -
Eupl04g00634 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 313 - -
Eupl04g00634 326 SMART HOX_1 245 310 IPR001356 GO:0003677
Eupl04g00634 326 Pfam KNOX1 domain 86 128 IPR005540 GO:0003677|GO:0005634
Eupl04g00634 326 CDD homeodomain 255 307 IPR001356 GO:0003677
Eupl04g00634 326 SMART ELK_2 223 244 IPR005539 GO:0003677
Eupl04g00634 326 Pfam ELK domain 223 244 IPR005539 GO:0003677
Eupl04g00634 326 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Eupl04g00634 326 Gene3D - 240 314 - -
Eupl04g00634 326 SMART KNOX1_2 85 129 IPR005540 GO:0003677|GO:0005634
Eupl04g00634 326 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Eupl04g00634 326 Pfam KNOX2 domain 139 184 IPR005541 GO:0003677|GO:0005634
Eupl04g00634 326 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Eupl04g00634 326 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Eupl04g00634 326 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00634 Eupl-Chr4 9666934 9681263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00634 2 326 Homeobox Transcription Factor Family AT1G23380 63.582 1.95e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl04g00634 KNOX2 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00634 - - msin:131234751 486.493