Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00628 ATGTCTTCTCCTTTCTGCCTTGTTTTCTTTCTCTTCTTCTTCTTCTTATTCTGCTTCATAAACCCTTCTCTTTCAGATCCACGAGCTACACCGGCAGCTCTCATTTGCACCAACAGAACTTCTGCACTGCCCGATCGACAGACCTTCATCGCCAACTTCTTATCGGCCATGAGCGCCCTTACCCCTCTAATTTCCTCCCAGAATTTTGCCAGAGTTGTCGAAGGGTCTGGAAATAACACGGTATATGCATTCGGAGAATGCATGAAGGACCTCTCGCGGAACGATTGCGATTTCTGCTTCGCCCAATGTAAGACCCAGATCCTTAGGTGCCTCCCTTTTCAAAGAGCGATTCGGGGTGGGAGAAATTACTTTGATGGGTGTTATCTGAGGTACGACGATTACGAATTCTTCGGTGAAGCTCTGAGTCCGGGAGACACGAGAGTTTGTGGGAATAGAAGTTTCAGTGGAAATCGAACAGCTTTCAAGGCGAATACTGTTGAGCTAGTGAGGAATTTGAGTGTTGAAGCCCCAAAGAATAATGGGTTCTTTGTCGGGTCAGTGGTTCGAGGGAACACAACAGTTTATGGGTTAGCACAGTGCTGGGAATTTGTAAATCGGAGCTCTTGTCGGAGGTGTTTGGAGAATGCGGTCTCGACAATTGGTTCGTGTCTTCCGAATGAGGAAGGGAGGGTGTTAAATGCCGGGTGTTATTTGAGGTATTCCCCAGAGAGATTTTATAACAATTCGGATAGCCAAGCAGCAGGAGGTGGAGGACGTCGTCACTTAGCCATCATACTGGCAGTGACTTCTACTGCTTTAGCGGCTCTGATGATTATTGCAACTGGTGTTTTCTTTGGGAAGAGGAAACTTGCAAGGAGGAGGAAAGAGAGGAAGCAACTTGGTGCTCTGGCGGCAACTATAAATAAGTCTGAACTCAACTTCAAATATGAAACTCTTGAAAGAGCCACAAATTACTTTAACAATTCCAATAAGCTCGGTCAAGGAGGATCTGGTTCAGTGTACAAAGGGATTTTGCCAGATGGGAAGCCTGTTGCTATAAAGAGGTTGTTCTTTAATACAAGGCAATGGGTAGATCAATTCTTTAATGAAATTAATTTGATCAGCGACGTCCATCACAAAAATCTCGCGAAGCTGTTGGGTTGCAGCATTACGGGACCTGAAAGCCTTCTTGTTTATGAATACGTGCCAAACCATAGCCTCCAGGATCACCTTTTCAGTTAA 1242 0.4533 MSSPFCLVFFLFFFFLFCFINPSLSDPRATPAALICTNRTSALPDRQTFIANFLSAMSALTPLISSQNFARVVEGSGNNTVYAFGECMKDLSRNDCDFCFAQCKTQILRCLPFQRAIRGGRNYFDGCYLRYDDYEFFGEALSPGDTRVCGNRSFSGNRTAFKANTVELVRNLSVEAPKNNGFFVGSVVRGNTTVYGLAQCWEFVNRSSCRRCLENAVSTIGSCLPNEEGRVLNAGCYLRYSPERFYNNSDSQAAGGGGRRHLAIILAVTSTALAALMIIATGVFFGKRKLARRRKERKQLGALAATINKSELNFKYETLERATNYFNNSNKLGQGGSGSVYKGILPDGKPVAIKRLFFNTRQWVDQFFNEINLISDVHHKNLAKLLGCSITGPESLLVYEYVPNHSLQDHLFS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00628 413 Pfam Salt stress response/antifungal 149 241 IPR002902 -
Eupl04g00628 413 Pfam Salt stress response/antifungal 36 134 IPR002902 -
Eupl04g00628 413 ProSiteProfiles Gnk2-homologous domain profile. 142 245 IPR002902 -
Eupl04g00628 413 Gene3D - 32 136 IPR038408 -
Eupl04g00628 413 Gene3D - 145 245 IPR038408 -
Eupl04g00628 413 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Eupl04g00628 413 SUPERFAMILY Protein kinase-like (PK-like) 307 412 IPR011009 -
Eupl04g00628 413 FunFam Cysteine-rich receptor-like protein kinase 2 29 136 - -
Eupl04g00628 413 FunFam Cysteine-rich receptor-like protein kinase 3 145 245 - -
Eupl04g00628 413 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 412 - -
Eupl04g00628 413 FunFam Cysteine-rich receptor-like protein kinase 2 291 401 - -
Eupl04g00628 413 ProSiteProfiles Gnk2-homologous domain profile. 30 136 IPR002902 -
Eupl04g00628 413 ProSiteProfiles Protein kinase domain profile. 326 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00628 413 Pfam Protein kinase domain 327 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00628 413 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00628 Eupl-Chr4 9548954 9553745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00628 21 412 Receptor kinase-like Gene Family AT1G70530 58.883 7.00e-176 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl04g00628 Stress-antifung 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00628 - - nnu:104593144 637.876