Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00603 ATGCCCGTAAATCCATGGAACCTTTTTTCCTTTCTTCTCTTCTTCCTCTCTATGCCTTTCATGGCTTTTGCTGTCAACGAACAAGGCGAAGCCCTTCTATCATGGAAGAGGAGCTTGAACGGGTCGGTTCAGGTCTTGAACAACTGGGACCCGAATGATGAATACCCATGTGCTTGGTTCGGGATCTTATGCAATTATAACAAGGAAGTAGTGGAACTGAACATGAGGTACGTCGATCTACAAGGCCATGTTCCCTCTAACTTTACTTCATTGAAGTCACTGAACAAGCTGGTTCTATCAGGAACGAACCTCACCGGTTTGATCCCTAAAGAGCTAGCCAGTCTCAGCCAACTTGTTCACTTAGATTTGAGCGATAACGCACTCACCGGCGAAATCCCTACCGAAATCGGGAACATTTCGAGCTTGAGATGGTTGATTTTGTATGATAATCACCTTAGTGATGAAATCCCAAGTACGATAGGGAGTCTGAAGGAACTTGAAGTTTTTAGAGCTGGTGGTAACAAGAATCTCGAAGGTCCTCTGCCTCAAGAGATTGGGAATTGTAGCAATTTGGTCATGTTAGGTCTTGCAGAGACTAGCATCTCAGGGTTTCTTCCTCCTAGTCTGGGTCTTCTCAAGAGGCTTCAAACCTTGGCGATCTACACGGCGCTGCTTTCTGGCCAAATCCCTCCAGAGATCGGAGAATGTAGCGAGTTACAGAGTATATACTTGTACGAGAACGCACTCACCGGCGAAATCCCAGTCCGATTGGGAAATCTCCGCAATCTCCAGACTTTACTCCTCTGGCAAAACAACTTAGTCGGAGTCATTCCTTCAGAGCTTGGGAACTGCAAGGAATTAATGGTGATCGATATATCGATGAATATGATTACTGGTAGTATTCCACAGACATTTGGGAATTTGAGCTCGTTACAAGAATTACAGTTGAGTGTCAATCAAATCTCAGGTTCGATTCCATCGGAACTCGCGAACTGTCGAGGTCTTACTCATATTGAGCTCGATAACAATCAAATCACAGGTATGATTCCTTCGGAATTCGGACTGCTTGGGAATCTAACATTGTTGTTCTTATGGCAAAACAAGCTTGAAGGGAATATACCGTCGTCAATTTCACTGTGTCGGAATCTCGGAGCTATTGATTTATCTCAAAACAGTCTAATCGGAACGATTCCGAAGGGAATCTTTGAACTAGCGAATCTCAACAAGCTGCTACTTCTATCGAACAATCTATCAGGTGAAATCCCACGGGAGATCGGGAAATGCGAGTCACTGATCCGATTTAGAGCAAGCGACAACAAGATCACTGGAGCTATTCCGTCAGAGATCCAGAATCTGAGGAATTTGAGCTTCTTAGATCTTGGAGCAAACCGGTTGACTGGGATCATACCACCGGAGATATCCGGTTGCCGGAATCTGACATTCCTCGACTTACATTCCAACGCAATCGCCGGACCACTGCCCGAAAATTTTAACCAGCTTGTTTCCCTCCAATTCGTCGACGTCTCCGACAATTTGATCGGGGGGACATTGAGTCCGAGTCTGGGATCGTTGAGTTCACTCACAAAACTCGTCCTGAGTAAAAACCGATTTTCTGGTTCGATACCATCCCAACTCGGCTTGTGCACAAAGCTTCAGTTACTGGACCTGAGCGGGAACGAACTGACCGGTGATATTCCGGCGAGCGTTGGCAAGATTCCGTCGCTTGAGATTGCTTTGAATCTCAGCTCGAACAGGCTTTCCGGGGAGATCCCAGCCGAGTTTTCAAGCTTAGATAAGCTCGGAATCCTCGATCTCTCTCACAACCAGCTCTCCGGCGACCTCAAATACCTCGCCGAGCTTCAAAATCTGGTGGTCCTCAATGTCTCATACAACAGTTTCTCGGGGAGACTACCGGACAACTCTTTCTTCACTAAGCTTCCACTAAGCGACCTTGCCGGGAACCCCTCTCTCTGCTTCTCAGGTAACCGCTGCGCCACCGATACTCGCGGCGATGCCGCCAGACACGCCGCGACGAAGGCCAGGGTCGCAATGGTGGTGCTATTGTGCGCCGCGTGCGCACTACTCCTGGCGGCTCTCTATATCACCCTACAAGGGAAAAAGCGGCGCAATAGCTTCGGTGGGGATCACGGATGTGATATCGACGGTGATGACGACGTGGAGTTGGGACCACCGTGGGAAGTGACGCTGTACCAGAAGCTCGACATGTGCATTGCTGATGTGGCGAGGTGCCTGACAGCTGGTAACGTTGTAGGGAAGGGACGGTCGGGGGTCGTTTACAGGGCGAATATTCCGTCGGGATTAACAATCGCCGTTAAAAGATTCCGGTCCTCAGAGAAATTCTCGGCGTCAGCCTTCTTGTCAGAAATTGCCACGTTGGCACGTATAAGGCACAGGAATATCGTGCGCCTGTTGGGATGGGGCGCCAATCGGAGAACGAAGCTACTATTCTACGATTATTTGCCGAACGGTACACTGGGGTCATTGTTGCACGACGGTAGCGCAGGATTAGTAGAGTGGGAGACGCGGTTCAAAATAGCACTGGGGGTCGCGGAGGGACTCGCTTACTTACACCACGACTGCGTTCCGGCCATCCTGCACCGTGATGTGAAAGTGCACAACATCCTCTTGGGGGAGCGGTACGAGGCTTGCTTAGCGGACTTTGGGCTGGCTAGGTTCGTCGAAGATGAGAATGGCTCGTTTTCCGCGAACCCGCAGTTTGCTGGTTCGTATGGTTACATTGCACCCGAGTACGCTTGCATGTTAAAAGTAACGGAGAAAAGCGACGTCTATAGCTACGGCGTGGTCCTCCTCGAAATCATAACTGGAAAAAAACCAGTAGATCCTTCATTCCCCGAAGGCCAAAACATAGTTCAATGGGTTCGTGATCAACTAAAGTGGAAGAAGGACCCAAGTGAGATCATTGATCCCAAGCTTCAAGGCCGTCCTGTCTCCCAAATACAAGAGATGCTCCAAGCTCTAGGGATCTCCCTACTCTGTGCAAGTTTCCGTGCAGAAGACCGACCGACAATGAAAGACGTTGCGGCACTACTAAGGGAGATCGGACATGATCAACTCCCGGCAGGAATCGAAGCCCAAAAGCCCACCAGTAACTCTTGGAAGAAGTCGGAAGTGCCCTCGTACACGTCATCACTATCTGCTGCTCAACTGCTGCTTCTTCAAGGATCTTCCAATTCCTCACTAGTCTACTCATCTTCCTTTGCTGGTTTGTCGGAGAACTAA 3261 0.4916 MPVNPWNLFSFLLFFLSMPFMAFAVNEQGEALLSWKRSLNGSVQVLNNWDPNDEYPCAWFGILCNYNKEVVELNMRYVDLQGHVPSNFTSLKSLNKLVLSGTNLTGLIPKELASLSQLVHLDLSDNALTGEIPTEIGNISSLRWLILYDNHLSDEIPSTIGSLKELEVFRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSISGFLPPSLGLLKRLQTLAIYTALLSGQIPPEIGECSELQSIYLYENALTGEIPVRLGNLRNLQTLLLWQNNLVGVIPSELGNCKELMVIDISMNMITGSIPQTFGNLSSLQELQLSVNQISGSIPSELANCRGLTHIELDNNQITGMIPSEFGLLGNLTLLFLWQNKLEGNIPSSISLCRNLGAIDLSQNSLIGTIPKGIFELANLNKLLLLSNNLSGEIPREIGKCESLIRFRASDNKITGAIPSEIQNLRNLSFLDLGANRLTGIIPPEISGCRNLTFLDLHSNAIAGPLPENFNQLVSLQFVDVSDNLIGGTLSPSLGSLSSLTKLVLSKNRFSGSIPSQLGLCTKLQLLDLSGNELTGDIPASVGKIPSLEIALNLSSNRLSGEIPAEFSSLDKLGILDLSHNQLSGDLKYLAELQNLVVLNVSYNSFSGRLPDNSFFTKLPLSDLAGNPSLCFSGNRCATDTRGDAARHAATKARVAMVVLLCAACALLLAALYITLQGKKRRNSFGGDHGCDIDGDDDVELGPPWEVTLYQKLDMCIADVARCLTAGNVVGKGRSGVVYRANIPSGLTIAVKRFRSSEKFSASAFLSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGTLGSLLHDGSAGLVEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKVHNILLGERYEACLADFGLARFVEDENGSFSANPQFAGSYGYIAPEYACMLKVTEKSDVYSYGVVLLEIITGKKPVDPSFPEGQNIVQWVRDQLKWKKDPSEIIDPKLQGRPVSQIQEMLQALGISLLCASFRAEDRPTMKDVAALLREIGHDQLPAGIEAQKPTSNSWKKSEVPSYTSSLSAAQLLLLQGSSNSSLVYSSSFAGLSEN* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00603 1086 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 25 177 - -
Eupl04g00603 1086 PRINTS Leucine-rich repeat signature 597 610 - -
Eupl04g00603 1086 PRINTS Leucine-rich repeat signature 118 131 - -
Eupl04g00603 1086 SMART LRR_sd22_2 115 141 - -
Eupl04g00603 1086 SMART LRR_sd22_2 597 622 - -
Eupl04g00603 1086 SMART LRR_sd22_2 476 499 - -
Eupl04g00603 1086 SMART LRR_sd22_2 308 331 - -
Eupl04g00603 1086 SMART LRR_sd22_2 452 475 - -
Eupl04g00603 1086 Pfam Leucine rich repeat 550 610 IPR001611 GO:0005515
Eupl04g00603 1086 Pfam Leucine rich repeat 73 128 IPR001611 GO:0005515
Eupl04g00603 1086 Pfam Leucine rich repeat 437 489 IPR001611 GO:0005515
Eupl04g00603 1086 Pfam Leucine rich repeat 261 321 IPR001611 GO:0005515
Eupl04g00603 1086 Gene3D Ribonuclease Inhibitor 175 252 IPR032675 -
Eupl04g00603 1086 Gene3D Phosphorylase Kinase; domain 1 742 826 - -
Eupl04g00603 1086 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 826 - -
Eupl04g00603 1086 SUPERFAMILY RNI-like 72 393 - -
Eupl04g00603 1086 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Eupl04g00603 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 178 398 - -
Eupl04g00603 1086 Gene3D Ribonuclease Inhibitor 353 669 IPR032675 -
Eupl04g00603 1086 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Eupl04g00603 1086 ProSiteProfiles Protein kinase domain profile. 751 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00603 1086 SUPERFAMILY L domain-like 349 660 - -
Eupl04g00603 1086 SMART LRR_typ_2 260 284 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 524 548 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 452 476 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 139 163 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 404 428 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 356 380 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 115 138 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 620 644 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 308 332 IPR003591 -
Eupl04g00603 1086 SMART LRR_typ_2 91 114 IPR003591 -
Eupl04g00603 1086 Pfam Protein kinase domain 754 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00603 1086 Gene3D Transferase(Phosphotransferase) domain 1 827 1043 - -
Eupl04g00603 1086 Gene3D Ribonuclease Inhibitor 253 352 IPR032675 -
Eupl04g00603 1086 ProSiteProfiles Leucine-rich repeat profile. 599 621 IPR001611 GO:0005515
Eupl04g00603 1086 SUPERFAMILY Protein kinase-like (PK-like) 746 1024 IPR011009 -
Eupl04g00603 1086 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 527 1019 - -
Eupl04g00603 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 871 883 IPR008271 GO:0004672|GO:0006468
Eupl04g00603 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 827 1041 - -
Eupl04g00603 1086 FunFam LRR receptor-like serine/threonine-protein kinase 498 573 - -
Eupl04g00603 1086 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 399 493 - -
Eupl04g00603 1086 SMART serkin_6 751 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00603 1086 FunFam Putative LRR receptor-like serine/threonine-protein kinase 578 663 - -
Eupl04g00603 1086 ProSitePatterns Protein kinases ATP-binding region signature. 757 779 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00603 Eupl-Chr4 9245344 9249138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00603 23 1027 Receptor kinase-like Gene Family AT5G56040 55.342 0.0 1097
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Eupl04g00603 Pkinase 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00603 - - nnu:104591449 1566.59