LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g00585	ATGGCCACAACAATGGCTCCCCAAAATCTCCTACTACTCTTCACAACCCTCTTCACTACAGTTCTCTCCTCCAATATCTTTGTCAAGTCTAGCCTTGTGTACCCTTTCACTTGCTCTGACAACATAAAAACATGTAATTCCTACTCCTACCACATCTCCAAAGACCTCACAGTGGAACAGATTGCCTCTTTTTACTCTGTTAACACATCCCAAATCAAACCCATAATCCATGGAACCAAACAGGATTATCTTATATCCGTCCCTTGCGGTTGCAAAGATGTCAACGGCACCGTCGGCTACTTCTATGACATCTCCTACAGTGTCAAACCAGGTGATACGTTTGTGAATGTTTCGGGCGATATTTACAGTGGACAAGCTTGGAAGGTTGAAGGAGAAGAGGCTCTATTTCTTGCAGGAGATGTAGCTCCCATACATCTTGTATGCGGGTGTTCAGGAAGCGACTCGCAAGTGGTGGTAACATACACAGTTCAAAAATATGATACTTTATCAGGGATTGCCGATTTGTTATCTGCTTATGTGAATGGGATTCAAAGCCTGAATGGAAGATTGACTAAAGATCCTGGTTTTATAGATGTTGGTTGGGTGTTGTTTGTGCCAATGGAAAAGAATGGAATTCGAGCTCCTAAGGAAGGGAAAAGAAAGAATTGGCGAATACTTATCGGCATATTGTCATCTGTGACGTTACTTTCAATTGGCACGTTAGTTGTTTTCCTTCTCAGGAGGAGGACAACCCCTCTGCTCACAGATGAAGATCCTAAAGCAGATGGCATACGCATGAGTTCCAAGAGAATTGCTTCTTTCCAGAACCAGTACCTCCACAGAGAAAACATGGAAGATGTAACACCATTCGAGTCTGAAAGACCTGTAATATTTAGTCTAGAGGAGATCGAAGAAGCTACAGCAAACTTTGACGAAACAAAGAAAATTGGACAGGGTGGATACGGGAGTGTATATTTTGGTGTTTTAGGGAAGCAGGAAGTTGCAATTAAGAAGATGAGATCTAACAAGTCCAAGGAGTTCTTCGCAGAGCTTAAGGTGTTGTGCAAGATACATCACATAAATGTGGTGGAACTGCTTGGATACGCGAGTGGAGATGACCACCTGTATTTGGTTTATGAATATGTTCAGAACGGATCTCTGAATGATTATCTTCATGACCCATTACTAAAAGGTCATCAACCTCTCTCTTGGACTACAAGAGCACAAATAGCACTTGATGCCGCAAGGGGTATTGAATATATTCATGACCATACAAAGGCGCGTTATGTGCACCGTGACATAAAGACAAGTAACATTCTACTAAATGAGGCACTCAGAGCAAAGGTAGCAGATTTTGGGCTGGCAAAGCTTGTAGAACGTACAGGCGAAGAAGATTTCTTCGCAACACGCTTGGTTGGAACACCTGGTTACCTTCCTCCTGAGTCCCTGCGTGAGCTGCAAATGAGCTCTAAAACTGATGTTTTTGCATTTGGAGTAGTTCTAGCAGAGCTGATAACCGGTCGGCATGCCCTCATTCGTGACAGCCAGGAACCCAACAAAATGAAACCACTAATCGCAGAGTTATATGCAGTTTTTCAAGATGAAGACCCAGAGAATGCTTTGGAGGCCATTATAGATTGTAATCTCAAAGGCAGCTACCCTGCAGAGGAAGTATACAAGATGGCAGAAATTTCTGAGTGGTGTTTGAGTGAAGATGCAGTGAATCGACCGGAGATGCAGGAGATTGTTGTGACCCTCTCTCAGATCCTGGTGTCCTCAATAGAGTGGGAGGCCTCACTTGGAGGGAATAGTCAGGTTTTCAGTGGGTTACTAAACGGAAGATGA	1845	0.4347	MATTMAPQNLLLLFTTLFTTVLSSNIFVKSSLVYPFTCSDNIKTCNSYSYHISKDLTVEQIASFYSVNTSQIKPIIHGTKQDYLISVPCGCKDVNGTVGYFYDISYSVKPGDTFVNVSGDIYSGQAWKVEGEEALFLAGDVAPIHLVCGCSGSDSQVVVTYTVQKYDTLSGIADLLSAYVNGIQSLNGRLTKDPGFIDVGWVLFVPMEKNGIRAPKEGKRKNWRILIGILSSVTLLSIGTLVVFLLRRRTTPLLTDEDPKADGIRMSSKRIASFQNQYLHRENMEDVTPFESERPVIFSLEEIEEATANFDETKKIGQGGYGSVYFGVLGKQEVAIKKMRSNKSKEFFAELKVLCKIHHINVVELLGYASGDDHLYLVYEYVQNGSLNDYLHDPLLKGHQPLSWTTRAQIALDAARGIEYIHDHTKARYVHRDIKTSNILLNEALRAKVADFGLAKLVERTGEEDFFATRLVGTPGYLPPESLRELQMSSKTDVFAFGVVLAELITGRHALIRDSQEPNKMKPLIAELYAVFQDEDPENALEAIIDCNLKGSYPAEEVYKMAEISEWCLSEDAVNRPEMQEIVVTLSQILVSSIEWEASLGGNSQVFSGLLNGR*	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g00585	614	FunFam	PTI1-like tyrosine-protein kinase 3	382	600	-	-
	Eupl04g00585	614	Pfam	Protein kinase domain	311	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl04g00585	614	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	29	608	IPR044812	GO:0019199\|GO:0045087
	Eupl04g00585	614	SUPERFAMILY	Protein kinase-like (PK-like)	292	586	IPR011009	-
	Eupl04g00585	614	Gene3D	Phosphorylase Kinase; domain 1	280	381	-	-
	Eupl04g00585	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	429	441	IPR008271	GO:0004672\|GO:0006468
	Eupl04g00585	614	SMART	serkin_6	310	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl04g00585	614	CDD	LysM	159	205	IPR018392	-
	Eupl04g00585	614	ProSiteProfiles	Protein kinase domain profile.	310	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl04g00585	614	ProSiteProfiles	LysM domain profile.	159	205	IPR018392	-
	Eupl04g00585	614	ProSitePatterns	Protein kinases ATP-binding region signature.	316	338	IPR017441	GO:0005524
	Eupl04g00585	614	Gene3D	Transferase(Phosphotransferase) domain 1	382	599	-	-
	Eupl04g00585	614	SMART	LysM_2	160	206	IPR018392	-
	Eupl04g00585	614	Gene3D	LysM domain	153	212	IPR036779	-
	Eupl04g00585	614	FunFam	Kinase family protein	285	381	-	-
	Eupl04g00585	614	SUPERFAMILY	LysM domain	159	206	IPR036779	-
	Eupl04g00585	614	Pfam	LysM domain	161	206	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g00585	Eupl-Chr4	8978607	8985259	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl04g00585	290	614	Receptor kinase-like Gene Family	AT1G51940	55.120	2.63e-124	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Eupl04g00585		Pkinase	1.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g00585	-		-	msin:131228195	848.966