Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00583 ATGGCTTCATCCAGCTCTTCCAACTCTCCCTGTGCTGCCTGCAAGTTCTTGAGGAGAAAATGCTTGCAAGGTTGCATCTTCGCACCCTATTTTCCACCCGAAGAACCACAGAAATTTGCCAATGTTCATAAGATCTTTGGTGCAAGTAACGTCACAAAGCTCCTCAATGAGCTCCTCCCCCATCAAAGAGAAGATGCAGTAAACTCTCTTGCCTATGAAGCCGAGGCCCGTATGAAGGATCCGGTGTATGGCTGTGTCGGAGCGATCTCAGTTCTTCAAAGAGAGGTTCACCGGCTCCAAAAGGAACTAGATGCTGCCAACGCGGATCTGATCCGGTATGCCTGCAATGAAATCCCAACAGCCTTGTCGGCACCCGTCCCACCCATGGGATCCCGCCAAAGGTCCATTGATCAGTTTAGTAGAAGGATGGGTAATGGAGGAGGTCCTCCGTTCTATGAGAATCCTGGTCTGCCTCTTCCATATCCTCCTCCCTGGACTGACAACCATGCAAGAGGAGGAGAAGGCAACATGTGA 534 0.5075 MASSSSSNSPCAACKFLRRKCLQGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQREVHRLQKELDAANADLIRYACNEIPTALSAPVPPMGSRQRSIDQFSRRMGNGGGPPFYENPGLPLPYPPPWTDNHARGGEGNM* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00583 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 128 - -
Eupl04g00583 177 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Eupl04g00583 177 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Eupl04g00583 177 MobiDBLite consensus disorder prediction 144 177 - -
Eupl04g00583 177 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00583 Eupl-Chr4 8963775 8965664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00583 1 114 AS2 family AT5G63090 89.565 5.90e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl04g00583 LOB 1.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00583 - - msin:131237894 281.952