Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00565 ATGGGTTCGGAAGAGAAGCGAATCGAAGAGGTACTATCCCTTCCAATTTTGCTAGCGGAGCGAGTCCGGAAATCAGTGGAAGAGGCGGAGTCTTTCAAGTTGGAGTGCTCCCAAGTCGGCAAACTGGTGGACCGACTCTCCCAAATGCTCCTTTCCACTGTACGCCTTGCCACCGCCACCCCTTCCCTCTACGAACGCCCCCTCCGCCGTATCCTCGCTGAACTCTCCAGGAACCTTGACCGTGCCCTAACCCTTGTCCGCAAGTGTAAGCGCAGCGGCGTCCTCCGCCTCGTATCCATCACCTCCGCCACAGACTTTCGCAAACTTATCAACCTCCTCGACGCTTCCCTCGGTGACTTCAAATGGCTCCTCAGCGTCTTCGACTTCGACGCTTCCTCCACCGGCGGTAGTGGTGGCGGTGGCGGTGTTGGTATCGTCCTCTCCCTCCCCCCCATTGCCTGCAACGACCCCATACTCTCCTGGGTCTGGTCCTTCGTCGCTGCTATGCAAATGGGCCCGTTGCCTGATCGTGTCGAGGCTGCCAACGAGCTCGCCTCCCTCGCCATTGATAACGATCGCAACAAGAAAATTATCGTAGAAGAAGGCGGTGTCCCTCCACTACTCAAACTGTTGAAGGAAGGCGCGTCTCCGGATGCTCAAATTGCCGCTGCCACCGCACTATCTAATTTGGCCACCGATCAGGAGAGAGTCCGCCGGATTGTGAATGAGCTTGGAATTCCGATAATTGTACAGGTTCTTTCCAATTCTCTGATGAGGGTTCAAATTCAAGTGGCGAATTTGATTTCCAGGATGGCGGAGAACGACCCAGATGCTCAGGAGGAGTTTGCGAGGGAGAATGCAATTAGGCCGCTTGTGTCGTTGCTGTCGTTCGAGACATTCACCGATGAACTCAAACCTCAATTGGGTAAGCCCACTAGTATTCATTCTCTGGTTCAAATTAATATGGAGGTTGGGGAAAATTCGAATTCAAAGACTTCGCAGCACCATCACCTGCGTTCGAATTCCGGGTCTTCTTTGCATTCTGAAGGTAGTAGTCGAGGTGGGCACCGTAGGAAAGAGAGGGAGAATGAAAAGCCTGAGGTGAAACTGAAGCTTAAGATTAACTGTGCTGAGGCTCTGTGGATGCTCTCCAAAGGGAGTGTGTCAAACAGCCGGAGGATTACTGAGATGAAGGGGCTGCTTTGTTTGGCGAAGCTTATCGAGATGGGGCAAGGGGAGTTGCAGCTCAATTGCTTGATGACGGTGATGGAGATAGCTGCCACAGCAGATTTCGACGCTGACCTCAGACGGGCAGCTTTCAAGACCAATTCTCCTGCGGCAAAGGCAGTTGTGGATCAGCTTCTGAGATTAATTCGAGAGGAATGCAGTTCGTCACTGCAAATTCCTGCTATTAAATCAGTTGGGTTGTTGGCTCGCACCTTCCCGGCAAGGGAGACCCAAGTCATTGGTACCCTAGTGACACAGCTCGGTCACCAGAACCTGGATATTGCCATGGAAGCCACCATTGCCTTGGGGAAGTTTACTTGTCCAGAGAATTTTCTTCGTGTGCAGCACTCCAAGACTATCATTGAGTTCGATGGGGTCCCACCTCTGATGAGACTGTTGAGGGCTAATGAGCGGGATCAGCTCCATGGACTCATTCTCCTCTGTTATCTAGCGTTGCACGTGGGCAACAGCGAGGCTCTGGAACGGGCAAGGGCATTGACTGCTCTCGAGATAGCAGCTCGTTCTGCAGTGGCTCAACATCCTTCTTTGAGAGAATTGATTCCCAGGGCCATATACCACCTTGGGCTCTACAAGGCGGGAATTCATCCCCACTAG 1842 0.5271 MGSEEKRIEEVLSLPILLAERVRKSVEEAESFKLECSQVGKLVDRLSQMLLSTVRLATATPSLYERPLRRILAELSRNLDRALTLVRKCKRSGVLRLVSITSATDFRKLINLLDASLGDFKWLLSVFDFDASSTGGSGGGGGVGIVLSLPPIACNDPILSWVWSFVAAMQMGPLPDRVEAANELASLAIDNDRNKKIIVEEGGVPPLLKLLKEGASPDAQIAAATALSNLATDQERVRRIVNELGIPIIVQVLSNSLMRVQIQVANLISRMAENDPDAQEEFARENAIRPLVSLLSFETFTDELKPQLGKPTSIHSLVQINMEVGENSNSKTSQHHHLRSNSGSSLHSEGSSRGGHRRKERENEKPEVKLKLKINCAEALWMLSKGSVSNSRRITEMKGLLCLAKLIEMGQGELQLNCLMTVMEIAATADFDADLRRAAFKTNSPAAKAVVDQLLRLIREECSSSLQIPAIKSVGLLARTFPARETQVIGTLVTQLGHQNLDIAMEATIALGKFTCPENFLRVQHSKTIIEFDGVPPLMRLLRANERDQLHGLILLCYLALHVGNSEALERARALTALEIAARSAVAQHPSLRELIPRAIYHLGLYKAGIHPH* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00565 613 MobiDBLite consensus disorder prediction 328 350 - -
Eupl04g00565 613 SMART arm_5 233 273 IPR000225 GO:0005515
Eupl04g00565 613 SMART arm_5 522 561 IPR000225 GO:0005515
Eupl04g00565 613 SMART arm_5 275 385 IPR000225 GO:0005515
Eupl04g00565 613 SMART arm_5 190 232 IPR000225 GO:0005515
Eupl04g00565 613 SUPERFAMILY ARM repeat 176 605 IPR016024 -
Eupl04g00565 613 MobiDBLite consensus disorder prediction 328 367 - -
Eupl04g00565 613 MobiDBLite consensus disorder prediction 351 367 - -
Eupl04g00565 613 Gene3D - 7 126 IPR036537 GO:0007166
Eupl04g00565 613 Gene3D - 169 336 IPR011989 -
Eupl04g00565 613 Gene3D - 439 607 IPR011989 -
Eupl04g00565 613 Gene3D - 361 438 IPR011989 -
Eupl04g00565 613 PANTHER ARMADILLO REPEAT ONLY 4 7 607 - -
Eupl04g00565 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 245 IPR000225 GO:0005515
Eupl04g00565 613 Pfam Armadillo/beta-catenin-like repeat 191 231 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00565 Eupl-Chr4 8751061 8753600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00565 162 295 U-box Gene Family AT1G23030 32.090 2.83e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00565 - - nnu:104591480 828.55