Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00561 ATGGCTCTGCCTCTATTGAATCTACCTCGCCTCAGCCCTTCTTTCCCCCATAGACAACCACTCTTTCTCCTTCCTCACAGGAGACCCCAGTTCACCACCAACACTAATTTTCGATCCTCTCCTCTCGTTACGCTGATTAACACCAGAGGCAATTCATTTTCTATTCCAAAATCGGCCTCCATTGATGGATTCTCCGTGCAAAACCTCCAGGGAGAGAGTGATGGTGGAGAGAACAATGTTGGGTTTATGGAGAGGTTATATAGGTGGATTGTTTTTCTTCGATCGGTTGCACCGGGTGGAAGTTGGTGGAGGTTCCCTGATCAAGTCCAAGGAGTTGTCATCGCGAAACCAGTGACAGTGTTCTTCGCACTTCGTCGAATGTGGGAGTTAGTTGCTAACGATAGATGGGTTATCTTCGCTGCATTTGCTGCCCTAATTCTCGCAGCGCTTTCGGAGATCTCAATACCACATTTCTTGGCAGCATCTATTTTTTCTGCACAGAGTGGTGAGACCGTGGTGTTCCATAGGAATGCGCGGCTCTTGGTTCTGTTGTGTTTTACTTCAGGAATATGCAGTGGTGTACGGGGTTGCTGTTTTAGCATTGCAAATATGATCCTGGTTAAGCGCATGAGGGAAGTGTTTTATTCAGCTCTTCTCTTTCAGGATATATCCTTTTTCGATACAGAAACTGTGGGCGATTTGACAAGTAGGCTGGGTTCAGATTGTCAGCAAGTATCTCGTGTTATTGGAAATGATCTTAATATGATATTACGCAATGTTCTTCAGGGTACAGGTGCATTGATCTATTTGTTTATTTTGTCGTGGCCTCTTGCATTATCTTCATTGGCAATATGCTCCACCCTATCAACAATCATGCTGTTTTATGGCCAGTACCAGAAGAAAGCCGCAAAATTAACCCAAGAATCCACTGCTTGTGCCAACGAGGTTGCGCAAGAAACATTTTCATTGATGAGAACTGTCCGAGTGTATGGAACAGAGAAACAAGAACTTGGAAGATACAAACAATGGCTGAATAAATTAGCTGATATAAGCTTGCGACAGAGTGTGGCTTATGGATTTTGGAGTCTGAGCTTCAACACCCTTTATCATTCAACACAGGTTATTGCTGTGCTGGTAGGAGGAACGTCAATTATGGCTGGTCATATAACGGCAGAGCAACTCACAAAGTTTATATTGTACTGCGAGTGGTTGATTTATGCAACATGGTGGGTCGGAGACAATTTGTCATCTTTAATGCAGTCTGTTGGGGCAAGTGAAAAGGTCTTCCAATTGATGGATCTCTTGCCCAGTGACCAATTCTTATCAGAAGGAGTGAAATTGCAAAGGCTGATGGGAAATATTGAGTTTGTGAATGTGTCTTTTCATTATCCTGCAAGGGCAACGGTACCTGTTCTGCAACAAGTAAACATGTCAATACACCCAAATGAAGTGGTTGCAATCGTTGGTCTTAGCGGTAGTGGGAAAAGCACATTAGTTAATCTTCTGCTTCGTCTGTATGAACCAACAGACGGTCAGATACTAATTGATGGCTTCCCTCTGAAAGACTTGGACGTCAAGTGGCTTAGAGAAAGAATTGGATTTGTGGGACAGGAACCCCGTCTTTTCCGAATGGATGTCAGTTCAAACATAAGATACGGATGCACCCGAGATATCAATCAGGAAGATGTCGAATGGGCTGCTAAGCAGGCATATGCTCATGACTTTATCTTGTCTCTACCCAATGGTTATGAAACCCTAGTTGACGATGATCTGCTCAGTGGAGGACAAAAGCAGCGGATCGCCATTGCAAGGGCCATTCTTAGGGACCCTTCTATTTTGATCCTTGATGAAGCTACCAGTGCACTGGATGCGGAGAGTGAACACAATATCAAGGGGGTTCTTCGAGCTGTAGGAAACAGCTCCCAGACAAAGAGAGCTGTCATTGTCATTGCGCATAGGCTATCAACAATACAAGCTGCTGACCGGATAGTAGTAATGAATGGTGGTAGAATTGTTGAGATGGGTGTGCACATGGAGCTTCAACGGAAGGATGGCTTGTATGCAAGATTAACCAAAAGACAGGCTGATGCCTTGGCATGA 2100 0.4443 MALPLLNLPRLSPSFPHRQPLFLLPHRRPQFTTNTNFRSSPLVTLINTRGNSFSIPKSASIDGFSVQNLQGESDGGENNVGFMERLYRWIVFLRSVAPGGSWWRFPDQVQGVVIAKPVTVFFALRRMWELVANDRWVIFAAFAALILAALSEISIPHFLAASIFSAQSGETVVFHRNARLLVLLCFTSGICSGVRGCCFSIANMILVKRMREVFYSALLFQDISFFDTETVGDLTSRLGSDCQQVSRVIGNDLNMILRNVLQGTGALIYLFILSWPLALSSLAICSTLSTIMLFYGQYQKKAAKLTQESTACANEVAQETFSLMRTVRVYGTEKQELGRYKQWLNKLADISLRQSVAYGFWSLSFNTLYHSTQVIAVLVGGTSIMAGHITAEQLTKFILYCEWLIYATWWVGDNLSSLMQSVGASEKVFQLMDLLPSDQFLSEGVKLQRLMGNIEFVNVSFHYPARATVPVLQQVNMSIHPNEVVAIVGLSGSGKSTLVNLLLRLYEPTDGQILIDGFPLKDLDVKWLRERIGFVGQEPRLFRMDVSSNIRYGCTRDINQEDVEWAAKQAYAHDFILSLPNGYETLVDDDLLSGGQKQRIAIARAILRDPSILILDEATSALDAESEHNIKGVLRAVGNSSQTKRAVIVIAHRLSTIQAADRIVVMNGGRIVEMGVHMELQRKDGLYARLTKRQADALA* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00561 699 CDD ABC_6TM_TAP 151 428 - -
Eupl04g00561 699 PIRSF ABC_prm/ATPase_B 78 699 - -
Eupl04g00561 699 SMART AAA_5 481 670 IPR003593 GO:0016887
Eupl04g00561 699 Pfam ABC transporter 472 620 IPR003439 GO:0005524
Eupl04g00561 699 FunFam ABC transporter B family member 26, chloroplastic 120 439 - -
Eupl04g00561 699 Pfam ABC transporter transmembrane region 139 405 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl04g00561 699 SUPERFAMILY ABC transporter transmembrane region 125 438 IPR036640 GO:0005524|GO:0016020
Eupl04g00561 699 PANTHER ABC TRANSPORTER B FAMILY 131 691 IPR039421 -
Eupl04g00561 699 FunFam Multidrug ABC transporter ATP-binding protein 446 698 - -
Eupl04g00561 699 ProSitePatterns ABC transporters family signature. 592 606 IPR017871 GO:0005524|GO:0016887
Eupl04g00561 699 Gene3D - 444 698 IPR027417 -
Eupl04g00561 699 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 139 420 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl04g00561 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 694 IPR027417 -
Eupl04g00561 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 454 693 IPR003439 GO:0005524
Eupl04g00561 699 Gene3D ABC transporter type 1, transmembrane domain 121 438 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00561 Eupl-Chr4 8650230 8677562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00561 209 697 Calmodulin-binding Proteins AT2G36910 35.141 3.47e-76 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00561 - - nnu:104593098 1094.72