Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00559 ATGACAAAAGAGATTTCATCTGATGGAGAAGCTAACGACGTTAAAGCCTCAGAGCAGACAGAGGACGAGAAGTTTCATCCTCATACGGGAGAAGGAGCCAGTCCTGGAAAGATTTTCATTGGGGGTTTAGCAAAAGAGACAACTTCTGCCCAGTTTATCAAGCATTTTGGTAAATATGGCGAAATTACGGATTCTGTGATAATGAAAGACCGGAGATCAGGACAACCCCGTGGATTTGGATTTGTGACTTATGCAGATCCATCTGTGGTTGATAAAGTCATACAAGACACACATAGTATCAATGGGAAACAAGTGGAAATCAAGCGGACTATACCGAAGGGAGCCATTAGCTCTAAGGATTTTAAGACAAAGAAGATCTTTGTGGGCGGAATTCCTACAACTGTGACGGAAGATGAATTTAAGGACTTCTTTTCAAGTTTTGGAGAAATCAAGGAGCATATGATCATGCGGGACCATGCCACCAGCCGTTCTCGTGGGTTTGGGTTTATTACATTTGACACTGAGCAAGCTGTTGACGATATCTTGGCCAAGGGGAACAAGCTTGAACTGGCTGGAGCTCAGGTGAGTTTAGAGACCACTAGGAAGATGGTCCCGGTCAGTTTTGTAACTGTTTCTATCTTATTTATGCTCAATAAGATAATGAATTTTTTGTGTACTTTTTCTCTCACGTGGGTTGGCAATAAAATATTTGGCACTTGTAAGTTGTGGTACATTTTAACGAAATTTGATGCATTTGATAACTAA 765 0.4118 MTKEISSDGEANDVKASEQTEDEKFHPHTGEGASPGKIFIGGLAKETTSAQFIKHFGKYGEITDSVIMKDRRSGQPRGFGFVTYADPSVVDKVIQDTHSINGKQVEIKRTIPKGAISSKDFKTKKIFVGGIPTTVTEDEFKDFFSSFGEIKEHMIMRDHATSRSRGFGFITFDTEQAVDDILAKGNKLELAGAQVSLETTRKMVPVSFVTVSILFMLNKIMNFLCTFSLTWVGNKIFGTCKLWYILTKFDAFDN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00559 254 Gene3D - 123 196 IPR012677 -
Eupl04g00559 254 Gene3D - 36 115 IPR012677 -
Eupl04g00559 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 105 IPR000504 GO:0003723
Eupl04g00559 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Eupl04g00559 254 SUPERFAMILY RNA-binding domain, RBD 33 114 IPR035979 GO:0003676
Eupl04g00559 254 SUPERFAMILY RNA-binding domain, RBD 119 201 IPR035979 GO:0003676
Eupl04g00559 254 MobiDBLite consensus disorder prediction 1 36 - -
Eupl04g00559 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 112 IPR000504 GO:0003723
Eupl04g00559 254 SMART rrm1_1 125 198 IPR000504 GO:0003723
Eupl04g00559 254 SMART rrm1_1 37 108 IPR000504 GO:0003723
Eupl04g00559 254 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 196 - -
Eupl04g00559 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Eupl04g00559 254 MobiDBLite consensus disorder prediction 1 30 - -
Eupl04g00559 254 FunFam Heterogeneous nuclear ribonucleoprotein 1 35 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00559 Eupl-Chr4 8574077 8576465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00559 38 195 Eukaryotic Initiation Factors Gene Family AT1G71770 22.424 1.26e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00559 K12741 - nnu:104593094 347.821