Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00554 ATGGAGAACTTGGCAGAAGCTCTCTTTCATGGCGGAAGAGAAGCTCAGATTAAAGCTGCAATGGATATTAGTAAACTAACGAGCATGCGAAGAAACATGTTGGCCGATGCAGGGGTCATCGCTCCTCTTGTTTCCATGCTTCGCTCTCAAGATTACGAGGTCATTGAAGCTTCTCTGTTTGCTCTACTCAGTCTCGCAATTCGCAGCGAAAGAAACAAGATCCGGATCACAAAATCAGGGGCGTTACAGGCTCTGATCGAAAGCGGCTCGTTGAATCAACTTGCGATAGCCACTCTTTTGACGCTTTCCACCTGCACAGCGAACAAATCGGCAATTGCGGCCTCTGGAGTTGTTCCTCTCTTAGTCCAGTTCCTCAATAGAGACGACGAAGACGACGACGTAGGGTACGGAGGCTTGCAAGCCAGGCTTGATGCCATTGATACACTTCACAATCTGTCGACATGTCATCAGGTTGTTCTATCGATCATCTCAACTGGCGCAGTGTTTTCCCTTCTACAACTCATCTACTGCTCCGAAAAATCATCGAAGATAGCTGAGAAGGCCATGGCACTACTCGAAAAGATCGCTTCGTCGTCGGAGATCGGACTTGCCCAGATCTCTGGCGCAGAAGGTGGGATTCTGGCTTTGGTGGAGACGGTTGAGGAGGGCTCCCAGCAGAGTAGAGACCACGCAGTGGGAGTTCTTCTTCTTATATGCAAAAGCTGCAGAGACAAGTATCGGGAGTTGATTTTGAGGGAAGGAGCCATACCAGGGTTGCTGCAGTTGTGCGTCGATGGAACATGGAGCTCTAAGGATAGAGCACGAGCTCTGTTATTATTGTTGAGGGAATCGTCGGATTATGGTTCGAGAAGGAGACAGTTAAGGAATGGGCTTTTCGAGCGGATTATGAGAGAGATTGATTCAGATGAAGAGAACCCCGTCGGACTCGGGACAGCGATGAGGCAAGTAGAGGAGATGATCGCGAATATCAACGTTTGA 999 0.4905 MENLAEALFHGGREAQIKAAMDISKLTSMRRNMLADAGVIAPLVSMLRSQDYEVIEASLFALLSLAIRSERNKIRITKSGALQALIESGSLNQLAIATLLTLSTCTANKSAIAASGVVPLLVQFLNRDDEDDDVGYGGLQARLDAIDTLHNLSTCHQVVLSIISTGAVFSLLQLIYCSEKSSKIAEKAMALLEKIASSSEIGLAQISGAEGGILALVETVEEGSQQSRDHAVGVLLLICKSCRDKYRELILREGAIPGLLQLCVDGTWSSKDRARALLLLLRESSDYGSRRRQLRNGLFERIMREIDSDEENPVGLGTAMRQVEEMIANINV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00554 332 SUPERFAMILY ARM repeat 3 312 IPR016024 -
Eupl04g00554 332 SMART arm_5 27 67 IPR000225 GO:0005515
Eupl04g00554 332 SMART arm_5 155 197 IPR000225 GO:0005515
Eupl04g00554 332 SMART arm_5 105 154 IPR000225 GO:0005515
Eupl04g00554 332 Gene3D - 1 88 IPR011989 -
Eupl04g00554 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 38 80 IPR000225 GO:0005515
Eupl04g00554 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 167 IPR000225 GO:0005515
Eupl04g00554 332 Gene3D - 89 314 IPR011989 -
Eupl04g00554 332 Pfam Armadillo/beta-catenin-like repeat 31 63 IPR000225 GO:0005515
Eupl04g00554 332 PANTHER U BOX DOMAIN-CONTAINING 3 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00554 Eupl-Chr4 8535801 8536888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00554 4 286 U-box Gene Family AT3G54790 33.219 7.64e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00554 - - cave:132183077 355.14