LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g00536	ATGGTTGATGGGTACAAAGGTTCTTTGCTAAATATAGGGGACATATCCTTTCTTGCCTCAGGAAAAAACATGGAATCATGTAATGGCTTCTACTCAGTCGACAAGTTCTGTTTGGATGCCAAGTGGCTGATAGATCCGAAGCATCTTTTTGTTGGGCCGAGGATTGGCGAGGGAGCTCACGCCAAAGTATACGAGGGAAAATATAGAAATCAGAATGTTGCAATTAAAATTGTTCATAGAGGAGAAACCCCAGAGGAGATTGCTAAGAGGGAAGCGCGATTCGCAAGAGAAGTTGCCATGTTGTCTAGAGTGCAACACAAAAACTTAGTAAAGTTTATTGGGGCTTGTAAGGAGCCTGTCATGGTGGTAGTAACTGAGCTTTTATTGGGTGGTTCATTGCGTAAATACTTGCTGAACTTGCGTCCGAGGTGCTTGGACACAGATGTGGCAGTTGGTTTTGCCATTGACATTGCTCGCGCAATGGAGTGCTTGCACTCACATGGGATCATCCACCGTGATCTGAAGCCTGAAAACTTGATCTTGACTGCAGACCAGAAAACAGTGAAACTTGTGGACTTTGGTTTAGCAAGAGAAGAGTCGTTAACAGAGATGATGACTGCTGAAACAGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACAGTCACATTGAGGCATGGAGAGAAGAAGCACTACAACCATAAGGTGGATGCCTACAGCTTTGCAATCGTGTTGTGGGAACTCTTACACAATCGGTTGCCGTTTGAAGGCATGTCAAACCTGCAGGCAGCCTACGCAGCTGCTTTTAAAAATGTGAGGCCCAGCGCAGAAAACCTCCCCGAGGATTTGGCTTTAATTCTAACTTCTTGTTGGAAGGAGGACCCGAACGCCAGACCCAACTTCAGCCAAATAGCGCAGATGCTCCTACACTATCTATCTACCCTTTCACAACCAGAACCCATGATCCCATCCCGCATGTTTTCTTCCGAGAATGCGGTCTTTCCACCAGAATCTCCAGGTACAAGCTCTTTGATGGCTATACGTGATGACTTGGGGGAAACCCCAAAGGCAAAGATGGAAAACAAATCGAGGGGATGCTTCTTCTGCTTCAACCACTGCTACTGA	1128	0.4637	MVDGYKGSLLNIGDISFLASGKNMESCNGFYSVDKFCLDAKWLIDPKHLFVGPRIGEGAHAKVYEGKYRNQNVAIKIVHRGETPEEIAKREARFAREVAMLSRVQHKNLVKFIGACKEPVMVVVTELLLGGSLRKYLLNLRPRCLDTDVAVGFAIDIARAMECLHSHGIIHRDLKPENLILTADQKTVKLVDFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELLHNRLPFEGMSNLQAAYAAAFKNVRPSAENLPEDLALILTSCWKEDPNARPNFSQIAQMLLHYLSTLSQPEPMIPSRMFSSENAVFPPESPGTSSLMAIRDDLGETPKAKMENKSRGCFFCFNHCY*	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g00536	375	Gene3D	Phosphorylase Kinase; domain 1	38	128	-	-
	Eupl04g00536	375	Pfam	Protein tyrosine and serine/threonine kinase	53	309	IPR001245	GO:0004672\|GO:0006468
	Eupl04g00536	375	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	42	310	-	-
	Eupl04g00536	375	SMART	serkin_6	49	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl04g00536	375	CDD	STKc_MAP3K-like	55	309	-	-
	Eupl04g00536	375	PRINTS	Tyrosine kinase catalytic domain signature	163	181	IPR001245	GO:0004672\|GO:0006468
	Eupl04g00536	375	PRINTS	Tyrosine kinase catalytic domain signature	237	259	IPR001245	GO:0004672\|GO:0006468
	Eupl04g00536	375	PRINTS	Tyrosine kinase catalytic domain signature	280	302	IPR001245	GO:0004672\|GO:0006468
	Eupl04g00536	375	PRINTS	Tyrosine kinase catalytic domain signature	125	138	IPR001245	GO:0004672\|GO:0006468
	Eupl04g00536	375	SUPERFAMILY	Protein kinase-like (PK-like)	41	337	IPR011009	-
	Eupl04g00536	375	FunFam	Kinase suppressor of Ras 1	38	128	-	-
	Eupl04g00536	375	ProSiteProfiles	Protein kinase domain profile.	49	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl04g00536	375	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Eupl04g00536	375	Gene3D	Transferase(Phosphotransferase) domain 1	130	330	-	-
	Eupl04g00536	375	ProSitePatterns	Protein kinases ATP-binding region signature.	55	76	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g00536	Eupl-Chr4	8353837	8360837	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl04g00536	32	375	MAP Kinase Kinase Kinase	AT5G50180	79.942	0.0	585

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Eupl04g00536		PK_Tyr_Ser-Thr	9.3e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g00536	-		-	ming:122079658	652.514