Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00535 ATGGAAGAAGCAATGAGGCAGCTAAACGGTCTGTCGTACTCACCGGAATGTGACAACAAAGAACTACCCATCGATAACCAGAGGAAGTGCAACAACAAGAGGTCGTTGAAGGACGGTGGAGGCACTGCTAGTGCTGGTGCGGCCATGAGATACCGAGGCGTTCGCCGCCGTCCCTGGGGACGATACGCGGCCGAGATAAGAGACCCTCAATCGAAGGAGAGACGTTGGTTAGGAACGTTCGACACGGCGGAGGAGGCTGCGTGCGCCTACGACTGCGCTGCTCGAGCCATGCGTGGCCCCAAAGCTCGCACAAACTTCGTCTACCCGCCTTCGCCTCCTCACCCATCGACTGAGCATCTCCTCCCACAGTTTAATTTCCCAAAACCATCTCCGCTTTCGATTCGGGACCTACACGGCCACCGACACACGCCGTTATCTGATTGGTCTTCGTGTTCGAAACCTCGTGTGGGTGATTTCTCTACTCCTATACAGAGAAACTCAGCGCTTAACATGTATTTCTTTCGTGACTTCCTAAGTTCTTCGTCTTCAAGCTCTTCTTGCTCGCCTGCTCCAAACCTAAGCGATTCAATACCTTACTTCAGCAGTTCCGGTTCTGCTCCATGTTCTTTCTCTTGCTGTTCTTTGTCCAACCCTTCTATTTCCACTACTACAGGAGTTGTTTCCGATGGTTTATCCTTCATGGGTTCTTCCTTGAATCTCCCAAGCGTCGAAGATCAAACTTACACTGGACCCACAATCGAAACCTCGAGTCCCATTGATGCAATGGACTTCTTTCCAACTGAGTCGTCTGATTCAGGCTTATTGCAGGAAATCATTCATGGGTTCTTCCCGAAATCTAGCTCTACTACAAAGTATAATTCTTCAAGTTCAAAGAGCTCCAATTGTTATGGACAGGCGTTCGTACCGCAGTCTGAAATCTCTCTTAACCCATCAGTGGATGAGGAGTTGAGGGCGATAGATAACGACCATTTCAGTTTGTATTTTGATTATAAAGGGCTTCCCCAGCAGTTCAATGATCCCAATGGTGGTTCTCGTTCGCAGCCAGTCCCATTTTGCGATGAACTTGCAACTAACTTTCCGGCAGTTCCTGAAGGGATGTTTGAGAATATTATACAGTATCCAGAACTTCTCGACATCTTTGCAGCCAAGTTGCAGAAGCCTTGA 1185 0.4886 MEEAMRQLNGLSYSPECDNKELPIDNQRKCNNKRSLKDGGGTASAGAAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGPKARTNFVYPPSPPHPSTEHLLPQFNFPKPSPLSIRDLHGHRHTPLSDWSSCSKPRVGDFSTPIQRNSALNMYFFRDFLSSSSSSSSCSPAPNLSDSIPYFSSSGSAPCSFSCCSLSNPSISTTTGVVSDGLSFMGSSLNLPSVEDQTYTGPTIETSSPIDAMDFFPTESSDSGLLQEIIHGFFPKSSSTTKYNSSSSKSSNCYGQAFVPQSEISLNPSVDEELRAIDNDHFSLYFDYKGLPQQFNDPNGGSRSQPVPFCDELATNFPAVPEGMFENIIQYPELLDIFAAKLQKP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00535 394 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 262 - -
Eupl04g00535 394 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Eupl04g00535 394 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Eupl04g00535 394 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Eupl04g00535 394 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Eupl04g00535 394 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Eupl04g00535 394 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Eupl04g00535 394 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Eupl04g00535 394 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Eupl04g00535 394 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00535 Eupl-Chr4 8334835 8336086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00535 1 285 AP2-EREBP Transcription Factor Family AT1G24590 38.926 4.51e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl04g00535 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00535 - - nnu:104591971 399.823