Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00527 ATGGGGCTCTCAAACTATCCCAGTGCAGCAGAAGGAATTCTTCCAGTACTAGTGATGAACACAGTTCTTTCAGTTGCTCTACTGAAGAACATGGTACGATCAGTGCTTCAGGTGATGGGTTGTATTGAAAATCCTCCAGATTTAGAGGAAGATTCTCCAAGTGAAGTATACCCATCGTTTACAGAGAATGTAAGACAGAGGAGAATATCTGTTACCCTGTTCAAAACTCTCTGCAACAATAGGTCCAGTATTACTAGAACTATTAGTTGGTCTTCAGTGGAGTGTTGCGTTTGTCTGCATGGATTTGAAGGTCATGAGGAGGTGAGCGAGTTGTCCTCTTGCAAGCATTTCTTCCACAAGGGTTGCTTGGAGAAGTGGTTCGATCATAAACACAGCACTTGCCCTCTTTGTAGATCCACCATCCAATAG 429 0.4336 MGLSNYPSAAEGILPVLVMNTVLSVALLKNMVRSVLQVMGCIENPPDLEEDSPSEVYPSFTENVRQRRISVTLFKTLCNNRSSITRTISWSSVECCVCLHGFEGHEEVSELSSCKHFFHKGCLEKWFDHKHSTCPLCRSTIQ* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00527 142 Pfam Ring finger domain 94 138 IPR001841 -
Eupl04g00527 142 SMART ringv_2 94 138 IPR011016 GO:0008270
Eupl04g00527 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 142 IPR013083 -
Eupl04g00527 142 PANTHER - 1 141 IPR044249 -
Eupl04g00527 142 SMART ring_2 95 137 IPR001841 -
Eupl04g00527 142 ProSiteProfiles Zinc finger RING-type profile. 95 138 IPR001841 -
Eupl04g00527 142 SUPERFAMILY RING/U-box 87 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00527 Eupl-Chr4 8241176 8241604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00527 1 141 C3H Transcription Factor Family AT2G04240 34.783 4.79e-22 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00527 K16285 - pvy:116118573 182.57