Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00526 ATGAGTAGTTCTCCTATGGAAATCTCTCTGCAAAATGCCATTGATGCAGACACTTGTAAATCTAACGGCGTCTCGGAGTCGGCTTCTTCATCTCTCTTGGCAAATGACAAGATCCTCGTTTCTGTTGAAGTCTGCTTGAATCCCTCGAGCACGGCTAGGATCGAGGATGTCCAGGCAGCTGTTGAAAGAATGCTTGAAAAGAGGAGTTTGAGCTATGCAGATGGTCCTGTTCCAGTACCCGTTGATGATACATTTCTCTTAGAAAATGTACAACGGATATGTATTTGTGACACGGATGGAGGGGTGGAGAACCATGAAATTCTTCTGTTCTGGCAAGTCAAACCTGTTGTACATGTCTTTCAGCTCAGTGAGGAGGGACCAGGTGAAGAATCAAGTGAGGATGGTCAACTTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATTTATGAATCTGGTCTCAAGCAAAGGTTGTTGCGGTATGCTGCAAGTGCTTTACTCTTCACTGAGAAAGGTGTTAATCCTTTCCTTGTGTCATGGAACCGTATCGTCCTATTACATGGACCCCCAGGGACTGGAAAGACATCTTTATGTAAAGCATTGGCTCAGAAGCTTTCTATACGTTTAAGTTCCAGATACCCACAATGCCAATTAATTGAGGTTAATGCACATTCTTTATTCAGTAAATGGTTTTCTGAGAGCGGCAAATTGGTTGCAAGACTTTTCCAGAAAATTCAAGAGATGGTGGAGGAAGAAAACAACCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTCACTGCTGCAAGAAAGGCTGCCTTGTCTGGCTCTGAACCTTCGGACTCTATTCGGGTTGTGAATGCTCTACTTACACAGATGGACAAATTAAAATCCTCCCCTAATGTGATCATCCTAACAACTTCAAATATAACAGCTGCAATTGATGTTGCGTTTGTTGATCGAGCAGATATCAAGGCATATGTCGGCCCCCCTACTCTTCAAGCACGTTATGAAATACTAAGGTCGTGTGTACAGGAACTTATACGGACTGGAATCTTAGCAGATTCTCAGGATCACCTCACTCTTCCTAACTATGCAAGCTTAAGAGAGATGCTGAATGCACCTGAGGCACAAGAGCCTCAAGGTCCACTTAATCTGTCTAAACAATTGCTTGAAGCCGCGGAAGTATGTGAGGGATTGAGTGGAAGGGGTTTGAGAAAGCTTCCTTTCTTAGCTCATGCAGTCCTTGCCAACACTTCCAGTTGTGACCCTAGCAAGTTTTTGTACACATTAATAGACACTGCAAGGAGGGAGCTGTCTGAGTTACTTGGTTGA 1362 0.4339 MSSSPMEISLQNAIDADTCKSNGVSESASSSLLANDKILVSVEVCLNPSSTARIEDVQAAVERMLEKRSLSYADGPVPVPVDDTFLLENVQRICICDTDGGVENHEILLFWQVKPVVHVFQLSEEGPGEESSEDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRLSSRYPQCQLIEVNAHSLFSKWFSESGKLVARLFQKIQEMVEEENNLVFVLIDEVESLTAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDVAFVDRADIKAYVGPPTLQARYEILRSCVQELIRTGILADSQDHLTLPNYASLREMLNAPEAQEPQGPLNLSKQLLEAAEVCEGLSGRGLRKLPFLAHAVLANTSSCDPSKFLYTLIDTARRELSELLG* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00526 453 ProSitePatterns AAA-protein family signature. 311 330 IPR003960 GO:0005524|GO:0016887
Eupl04g00526 453 SMART AAA_5 189 341 IPR003593 GO:0016887
Eupl04g00526 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 423 IPR027417 -
Eupl04g00526 453 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 31 450 IPR044539 -
Eupl04g00526 453 CDD RecA-like_Pch2-like 139 337 - -
Eupl04g00526 453 Gene3D - 129 357 IPR027417 -
Eupl04g00526 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 193 211 IPR001270 GO:0005524
Eupl04g00526 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 307 321 IPR001270 GO:0005524
Eupl04g00526 453 FunFam pachytene checkpoint protein 2 homolog 133 355 - -
Eupl04g00526 453 Pfam ATPase family associated with various cellular activities (AAA) 193 338 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00526 Eupl-Chr4 8240991 8253017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00526 138 350 Calmodulin-binding Proteins AT3G56690 29.358 2.74e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00526 K22399 - nnu:104591511 748.043