Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00519 ATGGCGATTGCAGCCACAGCCGCAGTAGCAGCTCCGTCAAAGATTCTGTTCACACCCTCTGCACCTTCATCTTCTATCACTACTACTAATTCCGCCAGTAATTGTACTAGTCTTTCAGCCTCTAATGGCAATATCCGTATTAAGCGATCCCTCGGCAGTACTAAATCAGCACCTCTTCTCTCCTCCTTCACCAATCCCTCCAGTATCTTTTGGTCGACTGCGACGACAACCCTTGAGACGAGACGCAGGTGGAGCCAGCGCTCGCTGACGGTCCGAGCCGCTAGAGGGAAGTTCGAGCGGAAGAAGCCCCATGTGAACATAGGGACTATAGGGCATGTGGACCACGGCAAGACCACTCTCACGGCAGCCCTTACCATGGCCCTGGCCTCCAATGGCAACAGTGCTCCCAAGAAGTACGACGAGATCGATGCGGCCCCTGAGGAAAGAGCGAGAGGAATCACCATTAATACCGCCACCGTGGAGTACGAGACGGAGAACCGGCACTACGCCCACGTGGACTGCCCTGGACATGCGGACTACGTTAAGAACATGATCACCGGCGCGGCCCAAATGGACGGTGCCATCTTGGTGGTGTCGGGTGCGGATGGTCCCATGCCCCAGACCAAGGAGCACATCCTCCTTGCCAAGCAAGTTGGTGTCCCCAATATGGTGGTCTTCCTCAACAAGCAGGACCAGGTCGATGACGAGGAGCTCCTCCAGCTCGTCGAATTAGAAGTCCGGGAGCTCCTATCCTCTTACGAGTTCCCTGGCGATGACGTCCCAATTATCTCTGGCTCCGCTCTTTTAGCCCTAGAGGCCCTCATGTCCAACCCTAACATTAAGAGAGGGGAGAACCAATGGGTTGACAAGATTTATGAACTCATGGATTCCGTCGACACCTACATCCCCATCCCCCAGCGCCAGACTGAACTCCCCTTCCTCCTCGCCGTCGAAGACGTTTTTTCCATCACTGGCCGTGGTACCGTCGCCACTGGCCGTGTTGAGAGAGGCACCGTCAGAGTCGGTGAGACTGTCGACCTTGTCGGCCTCAGGGAGACTCGCAACACTACCGTCACTGGCGTTGAGATGTTCCAGAAGATTCTCGATGAGGCTCTTGCTGGGGATAATGTCGGTATTCTACTCCGTGGTATTCAGAAAGTCGACATCCAGAGAGGGATGGTCCTTGCCAAGCCTGGTAGCATCACCCCGCACACCAAGTTCTCAGCAATTGTCTACGTCCTAAAAAAGGAGGAGGGTGGCAGGCACTCCCCTTTCTTCGCTGGTTACCGGCCTCAATTCTACATGAGGACCACAGATGTCACTGGCAGGGTCGCAACCATTATGAACGACAAGGACGAAGAGTCCAAGATGGTCATGCCTGGTGACCGAGTTAAGATGGTTGTTGAGCTCATCATGCCCGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGAGGCAAGACTGTTGGAGCAGGTGTCATCCAGTCCATCATCGAGTGA 1506 0.5452 MAIAATAAVAAPSKILFTPSAPSSSITTTNSASNCTSLSASNGNIRIKRSLGSTKSAPLLSSFTNPSSIFWSTATTTLETRRRWSQRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASNGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMSNPNIKRGENQWVDKIYELMDSVDTYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGILLRGIQKVDIQRGMVLAKPGSITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00519 501 Gene3D Translation factors 440 500 - -
Eupl04g00519 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 328 IPR027417 -
Eupl04g00519 501 Pfam Elongation factor Tu C-terminal domain 400 499 IPR004160 -
Eupl04g00519 501 NCBIfam small GTP-binding protein domain 105 237 IPR005225 GO:0005525
Eupl04g00519 501 SUPERFAMILY Translation proteins 307 403 IPR009000 -
Eupl04g00519 501 CDD EFTU_III 402 496 - -
Eupl04g00519 501 Gene3D Translation factors 308 436 - -
Eupl04g00519 501 FunFam Elongation factor Tu 440 500 - -
Eupl04g00519 501 PANTHER ELONGATION FACTOR TU-RELATED 49 500 - -
Eupl04g00519 501 Pfam Elongation factor Tu domain 2 327 395 IPR004161 GO:0005525
Eupl04g00519 501 Pfam Elongation factor Tu GTP binding domain 102 303 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 PRINTS GTP-binding elongation factor signature 170 180 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 PRINTS GTP-binding elongation factor signature 106 119 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 PRINTS GTP-binding elongation factor signature 186 197 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 PRINTS GTP-binding elongation factor signature 150 158 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 PRINTS GTP-binding elongation factor signature 223 232 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 102 306 IPR000795 GO:0003924|GO:0005525
Eupl04g00519 501 FunFam Elongation factor Tu 308 436 - -
Eupl04g00519 501 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 143 158 IPR031157 -
Eupl04g00519 501 CDD EF_Tu 103 305 IPR041709 -
Eupl04g00519 501 Gene3D - 94 305 IPR027417 -
Eupl04g00519 501 Hamap Elongation factor Tu [tuf]. 93 501 IPR004541 GO:0003746|GO:0005525|GO:0006414
Eupl04g00519 501 FunFam Elongation factor Tu 93 305 - -
Eupl04g00519 501 CDD EFTU_II 313 399 IPR033720 -
Eupl04g00519 501 NCBIfam elongation factor Tu 94 501 IPR004541 GO:0003746|GO:0005525|GO:0006414
Eupl04g00519 501 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 400 500 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00519 Eupl-Chr4 8161782 8167379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00519 100 499 Eukaryotic Initiation Factors Gene Family AT5G60390 30.201 9.91e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00519 K02358 - nnu:104610853 791.571