Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00485 ATGTCTCCTGCAGCTGCACCTCATTTCAAGCCTCTATCCATGGCGGACGGCTGCCTAACCTCTCTTCCGACCCTCTTCACCCCCAAAACCTCACACCCATTTCTCTCTTTCCCTTCGAAACCCATAAAACTCATTCACCTTTCCTGCTCTTCTTCTTTTCCTTCGTGGGTTTCTCTCAAAAACAAGATTTCTTCATCGACTGTAATCGCTCTCGTTGCGCAGACCTCCGATTGGGCTCAACAAGAGGAGGATAATGAAGTAGATGAAGATGGGTTGAAGTTTGAGAATCAAGAGGGAGAAGAGAGCGGTGGAGACGGGTTTGTGGAGGAGAGCGGTGAAGAGTCGTATCCGGAGCCACCAGAAGAGGCCAAGCTTTTTGTTGGAAATTTACCTTACGATATGGATAGTGAGAAGTTGGCTCAGCTCTTCGACCAAGCCGGAATTGTTGAGGTTGCCGAGGTAATTTACAACAGGGAAACTGATCAGAGTCGTGGGTTTGGGTTTGTCACTATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGAGATGCTTAACCGTTATGATGTAAATGGCAGGCTTTTGACGGTAAACAAGGCTGCTCCAAGAGGGTCACGGCCAGAGCGGGCCCCTCGAGTTTTTGAGTCTTCTTTCAGAATATACGTGGGGAATCTGCCATGGCAAGTGGATGATGCTCGCTTAGAGCAGGTGTTCAGTGAACATGGTAAGGTGGTGGATGCCAGGGTTGTTTATGACCGGGAGACTGGACGTTCACGTGGGTTCGGCTTTGTAACGATGTCCACACAGACCGAGTTGGATGATGCCATCGCTGCTCTTGACGGACAGAGTTTGGATGGAAGGGCGATCAGAGTGAACATGGCTGAGGAGAAACCAAGGCGCAGCTCCTTCTAA 909 0.4961 MSPAAAPHFKPLSMADGCLTSLPTLFTPKTSHPFLSFPSKPIKLIHLSCSSSFPSWVSLKNKISSSTVIALVAQTSDWAQQEEDNEVDEDGLKFENQEGEESGGDGFVEESGEESYPEPPEEAKLFVGNLPYDMDSEKLAQLFDQAGIVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMLNRYDVNGRLLTVNKAAPRGSRPERAPRVFESSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNMAEEKPRRSSF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00485 302 PANTHER OS02G0815200 PROTEIN 33 298 - -
Eupl04g00485 302 SMART rrm1_1 218 291 IPR000504 GO:0003723
Eupl04g00485 302 SMART rrm1_1 124 197 IPR000504 GO:0003723
Eupl04g00485 302 FunFam 31 kDa ribonucleoprotein, chloroplastic 207 301 - -
Eupl04g00485 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Eupl04g00485 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Eupl04g00485 302 Gene3D - 72 206 IPR012677 -
Eupl04g00485 302 Gene3D - 207 301 IPR012677 -
Eupl04g00485 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Eupl04g00485 302 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
Eupl04g00485 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Eupl04g00485 302 MobiDBLite consensus disorder prediction 96 121 - -
Eupl04g00485 302 SUPERFAMILY RNA-binding domain, RBD 118 210 IPR035979 GO:0003676
Eupl04g00485 302 CDD RRM2_NsCP33_like 218 293 - -
Eupl04g00485 302 MobiDBLite consensus disorder prediction 102 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00485 Eupl-Chr4 7560380 7565771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00485 121 299 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 9.19e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00485 - - nnu:104593034 483.411