Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00483 ATGTCAGAAGTTTCAAGGGGCTCAGTAGCTCATGCTGAACAGAAGGAAGTAGGACCTAATTACTTTGGTTACTACGTACGTGAAATTTCAGAGCTGTTCTCTCAAAATGAGGAATTCATTCCCCCTTTCTCTCCCCAAAATTCCGTATTAACTGCAACAGCATGTGCAAATGTCAAAGGCGACAGCATTGATATCCATTATTGTAATGGTGAAGAAGCTAACAGTTGTAGTGGTTCCAGTTCATTATTTAGTAATGGTGTAGGAGATGGGGTTTCAGACTTCAAGAGAGAAAGATTGAAGGCATCTCTCAAGCAGAGCGTTACTATCCTGAGTCAGGAAGTTGATGAGATGCTAGATCCCGTTTTAGCTATGTACCAGATACAAACACATCTAAGGGACAGAGAGTGTTTATCAAGTTATCCAATTGCATCTGATAGGGATGTGAATCGATCTTCCCGTAAGAAGCAGAAAATATCCTCCTCCCCCTCGTCAACCAGTATCCCTATAAATGCTGGAACTCTCGGCTCCCAATCTTGTGGAGAGGGATCCGGGTCAGAAGACATGGATGGGAAAGACCCAGATGCCGTTTCCTCGGAGGAAAGCCAGTTGAATTTCAAGTGGAGCTGTGTTGATTGCAAGACTACAAAAACCCCTCAATGGAGAGGTGGTCCAGCTGGGCCTAAGTCTCTCTGTAATGCTTGTTGGATGAGATACAGAAAGAAAAGGAGGGCTCCTCAGGGTTTGAATGGAGTAGAGAAAGAGAAGAAAACACAAGGGCCTCAATTTTTTTTCCAGGTGAATGAGGATTTGCAAATTCTTTTAGAAAGTGGTGGATCACAAGCTAAGGAAGCCGTGAAAAAATATTCCGATGAATTATCCGCGAAGCTAGGGCACATGGAGCACCAGCTTGAAGAACTTCTTGATATTGTGGTGTCCAAGTGCAGACAAATGACTCTTGCTGAGAAGCAGCAACTTCGAACACTGATTCAGAATCTCCCGCCGAAAAATCTGGACCGTGTTGTGGAAATTGTCCAACGTAGTAAGCTGCCAGATGGACATCCTTGCGACGAGATCCATATTGATTTGGAGTTGGAGGATAATTTAACACTTTGGAGATTGTACTACTATGTGGAAGCGGTTTCAAGTGCTAAAAAGCTCTCATCATAG 1167 0.4362 MSEVSRGSVAHAEQKEVGPNYFGYYVREISELFSQNEEFIPPFSPQNSVLTATACANVKGDSIDIHYCNGEEANSCSGSSSLFSNGVGDGVSDFKRERLKASLKQSVTILSQEVDEMLDPVLAMYQIQTHLRDRECLSSYPIASDRDVNRSSRKKQKISSSPSSTSIPINAGTLGSQSCGEGSGSEDMDGKDPDAVSSEESQLNFKWSCVDCKTTKTPQWRGGPAGPKSLCNACWMRYRKKRRAPQGLNGVEKEKKTQGPQFFFQVNEDLQILLESGGSQAKEAVKKYSDELSAKLGHMEHQLEELLDIVVSKCRQMTLAEKQQLRTLIQNLPPKNLDRVVEIVQRSKLPDGHPCDEIHIDLELEDNLTLWRLYYYVEAVSSAKKLSS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00483 388 Pfam Bromodomain extra-terminal - transcription regulation 316 378 IPR027353 -
Eupl04g00483 388 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Eupl04g00483 388 SMART GATA_3 203 260 IPR000679 GO:0006355|GO:0043565
Eupl04g00483 388 Gene3D - 311 386 IPR038336 -
Eupl04g00483 388 PANTHER OS01G0976800 PROTEIN 188 333 - -
Eupl04g00483 388 Gene3D - 206 261 IPR013088 GO:0006355|GO:0008270
Eupl04g00483 388 MobiDBLite consensus disorder prediction 155 183 - -
Eupl04g00483 388 MobiDBLite consensus disorder prediction 147 197 - -
Eupl04g00483 388 CDD ZnF_GATA 208 243 IPR000679 GO:0006355|GO:0043565
Eupl04g00483 388 ProSiteProfiles GATA-type zinc finger domain profile. 208 239 IPR000679 GO:0006355|GO:0043565
Eupl04g00483 388 ProSiteProfiles NET domain profile. 307 388 IPR027353 -
Eupl04g00483 388 Pfam GATA zinc finger 209 243 IPR000679 GO:0006355|GO:0043565
Eupl04g00483 388 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00483 Eupl-Chr4 7525041 7546305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00483 185 292 C2C2-Gata Transcription Factor Family AT5G49300 40.367 2.84e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl04g00483 BET 4.9e-19 CL0665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00483 - - nnu:104591545 393.66