Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00471 ATGTTAGCCAACACTCTTGAAAGTTGCCATGGCTATGTTACTGATCTAGCAGTTACCACTGATAATAGCTCTGTTGTTGCAGCACTTAGCTCACAGAAATTATATGTGTGGGATGCAGAGTCCGGTAGGGTACGTCACACTCTTACGGGACACAGAGATAAAGTCTGTGCTGTAGATGTGAGCAAGGTTTCGAGGAGCCACTATGCCGTTAGTGCCGCTCTTGATCGAACTATATGTACTTGGGATCTACAAGAAGGTTATAGTGTCTGCTCGGCCTTCTCAGGTAGCAATTGCAATGATCTTTGCATTAGCATGGATGGAGAAACCATTTGTTCGGGTCACGTTGATGGGAAAATCACATTTTGGAGTCTTCGGACGTATTGGAGGATTAAAGAAATTGCTGCTCACTCACAATCTGTTACTTCAATCTGTCCATTTCAAAATGCGAATATCGTTCTTACAAGGGGGAGGGATAATTTGCACAATCTAGTTGACATGCGGACTATGGAAGTTTGTGGGAGGTTTAGAACAAAATGTAAAAGAGTGGCCTCAAATTGGAGCGGGTCTTGTGTCAGTCCGGATGACAATTACATAGCTGTAGGATCTGCTGATGGATCTGTTTATGTGTGGTCGAGATTAATGGGCCGAATAGCGAGCACTCTAAGGGAACACACTGCTCCTGTTCTCTCTTGTTCTTGGAGTGGGCTGGGAATGCCCCTGGTCTCTACTGATGAGGACGGAACTGTTTGTGTTTGGACTTGA 762 0.4488 MLANTLESCHGYVTDLAVTTDNSSVVAALSSQKLYVWDAESGRVRHTLTGHRDKVCAVDVSKVSRSHYAVSAALDRTICTWDLQEGYSVCSAFSGSNCNDLCISMDGETICSGHVDGKITFWSLRTYWRIKEIAAHSQSVTSICPFQNANIVLTRGRDNLHNLVDMRTMEVCGRFRTKCKRVASNWSGSCVSPDDNYIAVGSADGSVYVWSRLMGRIASTLREHTAPVLSCSWSGLGMPLVSTDEDGTVCVWT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00471 253 Gene3D - 2 253 IPR015943 GO:0005515
Eupl04g00471 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 211 IPR001680 GO:0005515
Eupl04g00471 253 SMART WD40_4 214 253 IPR001680 GO:0005515
Eupl04g00471 253 SMART WD40_4 126 165 IPR001680 GO:0005515
Eupl04g00471 253 SMART WD40_4 176 211 IPR001680 GO:0005515
Eupl04g00471 253 SMART WD40_4 2 38 IPR001680 GO:0005515
Eupl04g00471 253 SMART WD40_4 86 123 IPR001680 GO:0005515
Eupl04g00471 253 SMART WD40_4 41 82 IPR001680 GO:0005515
Eupl04g00471 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 253 IPR001680 GO:0005515
Eupl04g00471 253 Pfam WD domain, G-beta repeat 190 211 IPR001680 GO:0005515
Eupl04g00471 253 Pfam WD domain, G-beta repeat 219 252 IPR001680 GO:0005515
Eupl04g00471 253 Pfam WD domain, G-beta repeat 95 123 IPR001680 GO:0005515
Eupl04g00471 253 Pfam WD domain, G-beta repeat 44 82 IPR001680 GO:0005515
Eupl04g00471 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 91 IPR001680 GO:0005515
Eupl04g00471 253 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 253 - -
Eupl04g00471 253 SUPERFAMILY WD40 repeat-like 5 253 IPR036322 GO:0005515
Eupl04g00471 253 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Eupl04g00471 253 PANTHER AUTOPHAGY PROTEIN 16-LIKE 5 225 IPR045160 GO:0000045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00471 Eupl-Chr4 7371503 7372673 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00471 1 208 U-box Gene Family AT1G04510 26.027 1.51e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00471 K17890 - ming:122067246 342.043