Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00461 ATGGATCCAGTGGCCGAAGAGCAATTGGATTATGAAGACGAAGAGTACGGAGGTGGTCAGAAGATGCAGTATCAGGGAGGTGGAGCAATTTCTGCACTCGCAGAGGAGGAGCTGATGGGGGAAGATGATGAGTATGATGATCTTTACAATGACGTGAATGTTGGTGAGGGTTTCCTGCAGCTGCATCGGTCTGAAACGGTCTCATTAGGGGGTGTGGGGAATGGGGGACTCCAAGCTCAGAAGACTGATGGTCCTGGGTCTAGGGTCCTCGAACCTGCTTCCTCGCATGAGGTAAGCATTCCTGGAGTTGGAGTGGAAGGGAAGGACTCAAACATTGGACCCAGCTTCCCTGAGCAGAACAAGGGAGGGTTTTTACCTGGCAAGGGCTTGGGAGCTGGTGATTTCCAAGATGGGGTTTCACAAAAAGGGAGAGCGTTGGAGATGGCTCCAGCTGCTCAAGTAGGAATTGTTGGGTTTCGAGGATCAGCACCCATGCCTCCCAAAATTGGGGTCGATCCTAGTCAGATGTCAGGAAAGTTTGCCAGTGGGTCTTCTTCGTTGCCAGATTTGGGCTCTGATGGTCCCAAAGGTGCCCCACAGATGCCGATTAATCGAATGGGCACAACTGTGAATCGTCCAATGGTGAACGAAAATGTGAGTCGGCCTGCTGTGGAGAATGGTGCGACCATGCTTTTTGTGGGAGAACTACATTGGTGGACTACTGATGCGGAGCTCGAAAGTGTGCTGTCTCAGTATGGTAGAGTCAAAGAAATCAAGTTTTTTGATGAGAGAGCTAGTGGGAAATCCAAAGGCTACTGTCAAGTTGAGTTCTATGACCCAGCTGCTGCATCTGCTTGCAAAGAAGGTATGAATGGCTACATTTTCAATGGGCGAGCTTGTGTGGTGGCTTTTGCTTCTGCACAAACTCATAAGCAGATGGGGGCTGCTTATCTGAACAAAACCCAAGGACAGGCCCAGTCTCAGTCACAGGGAAGGAGGCTTATGAATGATGGGGTTGGGAGAGGTGGTGGAATGAATTACCCAGGTGGAGACACCGGGAGGAACTATGGCAAGGTTGGTTGGGGTCGAGGTGGGCAGGGAATCCTCAACAGAGGTCAAGGGGGTGGAGGACCAATGAGGGGAAGAGGAGGGGCTATCGGAGCAAAGAGCATGGTCGGTGGCACTGGGGGCTTCGGAAGTGGTGCCAGTGGAGGAGGCCCTTATGGGCAAGGCCTTGCTGGTCCTGCAATGGGGGGTCCTGCTGGTGGGTTGATGCATCCCCATGGTATGATGGGTGCGGGATTTGATCCAACATATATGGGTCGAGGAGGTGGTTATGGAGGGTTTGCTGGTGCTGCTTTTCCTGGAATGATTCCTTCATTTCCAGGTGTTAACACAATGGCACTTCCCGGTGTGGCACCCCATGTCAATCCAGCTTTCTTTGGTCGGGGAGTGCCTGCAAACGGAATGGGAATAATGGGTAGCACTGGGATGGATGGACATCATGCTGGAATGTGGACTGATACAAGCATGGGTGGATGGGGAGGAGACGAACATGGGCGAAGGACAAGGGAGTCGAGTTATGGTGGTGATGATGGAGCATCTGATTATGGGTATGGAGAAGCAAGCCTTGAAAGAGGAGGAAGGTCAAATGCTGCCTCCAGGGAGAAGGACAGGGTTTCTGAGCGTGACTGGTCTGGGAACTCTGAGAGGAGACATCGTGACGAGAGGGAACAGGACTGGGACAGGTCTGAAAAGGACCACCGGTACAGGGAAGAAAAAGATGGGTACAGGGACCATCGACAGAAAGAGCGTGACTTGGATAACGGGGATGACTGGGATAGGGGGCAGTCCTCTTCAAGGTCTCGTAGTAAGTCTCGTATAATGCCAGAAGATGATCACAGGTCTCGATCAAGGGATGCGGATTATGGGAAGAGACGACGCCTACCGTCGGAGTGA 1959 0.5227 MDPVAEEQLDYEDEEYGGGQKMQYQGGGAISALAEEELMGEDDEYDDLYNDVNVGEGFLQLHRSETVSLGGVGNGGLQAQKTDGPGSRVLEPASSHEVSIPGVGVEGKDSNIGPSFPEQNKGGFLPGKGLGAGDFQDGVSQKGRALEMAPAAQVGIVGFRGSAPMPPKIGVDPSQMSGKFASGSSSLPDLGSDGPKGAPQMPINRMGTTVNRPMVNENVSRPAVENGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPAAASACKEGMNGYIFNGRACVVAFASAQTHKQMGAAYLNKTQGQAQSQSQGRRLMNDGVGRGGGMNYPGGDTGRNYGKVGWGRGGQGILNRGQGGGGPMRGRGGAIGAKSMVGGTGGFGSGASGGGPYGQGLAGPAMGGPAGGLMHPHGMMGAGFDPTYMGRGGGYGGFAGAAFPGMIPSFPGVNTMALPGVAPHVNPAFFGRGVPANGMGIMGSTGMDGHHAGMWTDTSMGGWGGDEHGRRTRESSYGGDDGASDYGYGEASLERGGRSNAASREKDRVSERDWSGNSERRHRDEREQDWDRSEKDHRYREEKDGYRDHRQKERDLDNGDDWDRGQSSSRSRSKSRIMPEDDHRSRSRDADYGKRRRLPSE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00461 652 MobiDBLite consensus disorder prediction 72 105 - -
Eupl04g00461 652 SUPERFAMILY RNA-binding domain, RBD 218 312 IPR035979 GO:0003676
Eupl04g00461 652 MobiDBLite consensus disorder prediction 515 529 - -
Eupl04g00461 652 MobiDBLite consensus disorder prediction 550 652 - -
Eupl04g00461 652 MobiDBLite consensus disorder prediction 177 198 - -
Eupl04g00461 652 MobiDBLite consensus disorder prediction 509 652 - -
Eupl04g00461 652 CDD RRM_CFIm68_CFIm59 231 304 - -
Eupl04g00461 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 300 IPR000504 GO:0003723
Eupl04g00461 652 Gene3D - 221 341 IPR012677 -
Eupl04g00461 652 SMART rrm1_1 230 303 IPR000504 GO:0003723
Eupl04g00461 652 MobiDBLite consensus disorder prediction 1 23 - -
Eupl04g00461 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Eupl04g00461 652 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 28 647 IPR034772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00461 Eupl-Chr4 7223401 7233781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00461 225 305 Eukaryotic Initiation Factors Gene Family AT1G49760 30.864 6.02e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00461 K14398 - ming:122079135 867.07