Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00457 ATGTCGGATGGACGGCGTCATTCCGTTGATATTCCTCTTTCAAAAACTCTAGTTGCACTGAGAAGAGTTAGGTCATTGAGGGACCCTTCAACAAACTCTATGAACAAAATTTCTGCTTTCGTTGACAATCTTACTTGGGAAACGAATTCTTGTAATGGGATTTCTCTCAGATTGGAAAAAAGTTGCAAAGAAGGGAGCTTGGGTGATCAGAGTCCTCTCCGGTCCCTGAATTTTGGTTTGGATGGAAGAAGAGAGGAATTTGTTAGTGATCCTGAATTAGATTATAGTTTGAAAAAACCTGATTCTGATTCAATTTCATCCTATAAATCGACCCGGGTTGGAAAGAGATGCTCGGATTCTATAAGGACCAAATGGGTTGACGAATCAGGCTATCCCAGGTCCACTGGAATTGGTGTTTATGGAAACAAATCCATCGGCAAAAGGCGTGATAGTGATTATAGGGACAAATCATTGGACTTGACAAGCATTCCGCCTTCCAACAACCATTTGGAGGATGTGGATTCATATAGTGAACCAACTTTAGGATCTGCACGGTCAGACAAAATTGATCCTGCTGTTGTAAAGTGGAAATCTAGATATGATAAACGAATTAAATCATCTCGGGCAGTAGATGTTGTTGGGAGTTGTTTAGGTAGTCCATTCCCGTCTGTAAGTGATGGTCGGATGGATGGGTTGAGCCGTAGCACATCAGTCTATGGAAATGAAGAGGTGGATATTGTGGGTCCCAATCACCATGGATGTGGGATTAGTTGTTGCTGGTCAAGAACCCCGAGATTCAGGGATTCTGATCTTCCTTCCGATATGGAAGACCATCCGTTGTTATCAGTGGAAGGTGGGGATATGGATCTATATGAACAAGAACGGAGCTGCACATATAGTAAGTGTGAAATTGCTCCTTATTCAGACACCCCGAGGAGTCTCAGTCAGAAATTCAGGCCAAGATCATTTGATGAGTTGGTGGGACAGCGCGTCGTGACACAGTCTCTACTGAATGCTATCTCAAAAGGAAAAATCACCTCCTTTTATCTCTTCCATGGTCCCCGTGGTACAGGTAAGACTTCGACATCTAGGATCTTTGCAGCTGCTTTGAATTGTCTCTCTCTTGAGGAACATAGGCCATGTGGACTGTGCCGAGAATGTGCGTTGTTCTTCTCTGGAAGGAGCAGAGATGTCAAGGAAGTGGATCCCTCAAGAACCAATCGGACAGATAGGGTTAGATCCCTCCTTAAAAATGCGGCTCGCCCTCCAGTGTCCTCGCGGTTTAAGGTCTTCATTATTGATGAGTGCCAGTTGCTGCGAGGGGAAACATGGGCAACTGTTTTGAATAGCCTAGATGACCTTCCTCGACATGTTGTCTTTGTAATGATCACTGCTGACCTGGATAACCTACCACGGAGTGCTGTTTCACGGTGTCAAAGGTACCACTTCCCAAAGATAAAAGATGCTGATATCGTGAACAGGTTGGCGAAAATCTGTGTTGAAGAAGGTTTGAATTTCGATAATGTTGCATTGGACTTCATTGCTACTAAATCTAATGGTTCACTTCGAGATGCTGAGATGATACTTGATCAGCTGAGTTTACTTGGGAAAAGAATCACAATATCACTGGCTTACGAACTTATTGGAATTGTTTCGGATGATGAGTTGCTCGATTTACTGGATCTGGCTTTGTCCTCAGACACTTCAAATACGGTTAGAAGGGCTAGGGAGCTTATGAAATCAAGGGTCGATCCTATGCAGCTAATATCACAGTTAGCTAATCTCATTATGGACATTCTTGCTGGAAGATGTCAGGGCAGACGTTCTGAAGTTGGAAGAAACTTCTTTGGAGGACATACTTCTGAAGCGGATTTCCAGAAATTGAGGCATGCGTTAAAAGTACTTTCTGAAACTGAGAAACAGTTGAGGACGTCAAAGAATCAAACGACGTGGCTCACCGTAGCTCTTTTGCAGTTAAGTTCTGTAGATTCCTCTTCCTTGGATGCAAATGATTCAAAGGCATGCCTGAGAACAGCACAGCAGAGAGAGGATGGCTTTTGCAGCACATCTTCGATAGGGGAGAGCCTGAAGCATCCCATCTCTTGTTTGTGTGATGACAATAAGTCCCAAAATGTGGAAATAAACAGCAATAGTAAGAGAAAATTGGAAACCATTTGGAGGAGAGCCATAGAAAGATGCCAATCTAATACACTTAGGAGCTTTTTACTAAAAGAAGGGAAATTGTCTTCTGTTTCCGTCAACCAAGGTCTGGCAGTAGCAGAAGTGGAATTCTGTCGTCCTGATCACATATCCAGAGCGGAGAAGTCGTGGAAACTGATTGCCAATTCACTTCAACTTGTGCTGGGGTGTAATGTAGAGATTAGAATCAATCTTGTGTCGTGTGCTTATGCCACGAAGAATGCCAAAGTGAAGAAGCCATCCTTTAGCTTGCTGAGTTGTTCTCGTAGAATGCATTCAACCACCGAGGATGGAAGTGACCAATCAGATAATTCTGATTTTACCTCCGATAAGGCTGTAAAAAGAGAAAGGCCCATTGAAACTTATTCCTCTGATCATGGCTCCCAGTTTTCACCTATCTGTTCCCATCGTAAAGAAGCAGCTACTTCTATTAGAAATGGTGAAGGAAACGCTCTAAGCACTGGGACAACCACATCCCATAGATCAATACAAGATGATACAACCAATGTGTCCCAGCTAGGAGTTACTTCTTCCAAAGAAGATGGAAACCGAGGATGTCAGGTTCTTGCCATTCCAGAACCTGAGAATCATCCAAGCTGTTTCGCGAAAACTCTGAGGTTTCAGAGAAAGTTACGTTCGTCTGATGATTCACATACGATCTGTTTGAGGATGCAGGCGCAAAACACACTTGATTTGTCTATTCCCGAGAAGACATCTTTTGAGACATATTTCTGCGCCAATGATCCTTACCTCGTCTGTTCAAGTTCCAATACGTTCAGTAACAGCTTGGGAGACGAAGACGGCAGATCAAGGAAGGAATCCAGGGTGAACTCAAAGGTGCATTGCTGGAGAGCTCCCAAGTTTCCCCATAGGAAGGCTTGGCAGCTGAGGCTGCAACACCAAAGATCACAGTTAGTGGGGTGGGTCCTACCCTGTGCGACTGCAAAGTAG 3150 0.4387 MSDGRRHSVDIPLSKTLVALRRVRSLRDPSTNSMNKISAFVDNLTWETNSCNGISLRLEKSCKEGSLGDQSPLRSLNFGLDGRREEFVSDPELDYSLKKPDSDSISSYKSTRVGKRCSDSIRTKWVDESGYPRSTGIGVYGNKSIGKRRDSDYRDKSLDLTSIPPSNNHLEDVDSYSEPTLGSARSDKIDPAVVKWKSRYDKRIKSSRAVDVVGSCLGSPFPSVSDGRMDGLSRSTSVYGNEEVDIVGPNHHGCGISCCWSRTPRFRDSDLPSDMEDHPLLSVEGGDMDLYEQERSCTYSKCEIAPYSDTPRSLSQKFRPRSFDELVGQRVVTQSLLNAISKGKITSFYLFHGPRGTGKTSTSRIFAAALNCLSLEEHRPCGLCRECALFFSGRSRDVKEVDPSRTNRTDRVRSLLKNAARPPVSSRFKVFIIDECQLLRGETWATVLNSLDDLPRHVVFVMITADLDNLPRSAVSRCQRYHFPKIKDADIVNRLAKICVEEGLNFDNVALDFIATKSNGSLRDAEMILDQLSLLGKRITISLAYELIGIVSDDELLDLLDLALSSDTSNTVRRARELMKSRVDPMQLISQLANLIMDILAGRCQGRRSEVGRNFFGGHTSEADFQKLRHALKVLSETEKQLRTSKNQTTWLTVALLQLSSVDSSSLDANDSKACLRTAQQREDGFCSTSSIGESLKHPISCLCDDNKSQNVEINSNSKRKLETIWRRAIERCQSNTLRSFLLKEGKLSSVSVNQGLAVAEVEFCRPDHISRAEKSWKLIANSLQLVLGCNVEIRINLVSCAYATKNAKVKKPSFSLLSCSRRMHSTTEDGSDQSDNSDFTSDKAVKRERPIETYSSDHGSQFSPICSHRKEAATSIRNGEGNALSTGTTTSHRSIQDDTTNVSQLGVTSSKEDGNRGCQVLAIPEPENHPSCFAKTLRFQRKLRSSDDSHTICLRMQAQNTLDLSIPEKTSFETYFCANDPYLVCSSSNTFSNSLGDEDGRSRKESRVNSKVHCWRAPKFPHRKAWQLRLQHQRSQLVGWVLPCATAK* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00457 1049 Coils Coil 628 648 - -
Eupl04g00457 1049 CDD AAA 327 480 - -
Eupl04g00457 1049 MobiDBLite consensus disorder prediction 826 865 - -
Eupl04g00457 1049 Gene3D - 487 549 - -
Eupl04g00457 1049 FunFam DNA polymerase III subunit gamma/tau 487 549 - -
Eupl04g00457 1049 MobiDBLite consensus disorder prediction 159 183 - -
Eupl04g00457 1049 MobiDBLite consensus disorder prediction 840 855 - -
Eupl04g00457 1049 NCBIfam DNA polymerase III subunit gamma/tau 313 659 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Eupl04g00457 1049 CDD HLD_clamp_pol_III_gamma_tau 486 549 IPR045085 -
Eupl04g00457 1049 Gene3D - 307 484 IPR027417 -
Eupl04g00457 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 536 IPR027417 -
Eupl04g00457 1049 Pfam DNA polymerase III, delta subunit 329 486 - -
Eupl04g00457 1049 SMART AAA_5 345 487 IPR003593 GO:0016887
Eupl04g00457 1049 FunFam DNA polymerase III subunit gamma/tau 309 485 - -
Eupl04g00457 1049 SUPERFAMILY post-AAA+ oligomerization domain-like 556 658 IPR008921 GO:0003677|GO:0006260
Eupl04g00457 1049 MobiDBLite consensus disorder prediction 160 182 - -
Eupl04g00457 1049 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 314 725 - -
Eupl04g00457 1049 MobiDBLite consensus disorder prediction 879 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00457 Eupl-Chr4 7162146 7170870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00457 304 667 Core DNA Replication Machinery Family AT1G21690 23.200 6.08e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00457 - - nnu:104593010 1332.78