Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00445 ATGGCAGCAGCAGCAGCAGCAGAGCTACCTCCAGAGATCCCTCAATGGCTCAAAACACTACCTCTAGCCCCAGAATACCATCCAACACTAGACGAATTCGAGGACCCCATCTCCTACATTCTCAAGATCGAAAAAGAAGCATCGAAGTATGGAATCTGCAAGATCATTCCTCCGGTGTCACCTGCGCCGAAGAAAACTGCAATCGCCAACCTCAACCGCTCTTTGGCCGCCCGGAACCCCAGCCATAACCCTAAATCCCCACCCACATTCACTACCAGGCACCAACAGATTGGATTTTGTCCTCGGAAGACTCGGCCCGTTCAGAAACCAGTATGGCAGAGCGGCGAAACTTACACTGTTCAGCAATTTGAAGTAAAGGCGAAGAATTTCGAGAAGACCCATTTGAAGAGAAGTGGGAAGAAGGGGTTTTCAGCGCTGGAAATCGAAACCCTTTTCTGGAAGGCCAGTGTGGATAAACCCTTTAGGGTGGAATATGCGAATGATATGCCAGGGTCGGCGTTTGTGCCGGTTAATGGGAAGAAATGGCGGGAAGCAGGGGAAGCGGCGACGGTCGGGGAGACGGCGTGGAATATGAGAGGGGTTTCAAGGGCGAAAGGGTCGCTATTGAGGTTTATGAAGGAGGAAATACGGGGTGTAACTTCGCCGATGGTGTATATAGCAATGATGTTTAGTTGGTTTGCTTGGCATGTGGAGGATCACGATTTGCATAGCTTGAACTATTTGCATATGGGGGCGGGGAAGACATGGTACGGAGTGCCGAAGGAAGCCGCTGTTGCGTTCGAGGAGGTAATTAGGGTTCAGGGGTTTGGAGGAGAAGTCAATCCTCTTGTTACTTTTGCTACTCTTGGTGAGAAGACAACGGTTATGTCTCCCGAAGTACTTATTGGTGCCGGAATTCCTTGCTGCAGATTGGTGCAAAATGCTGGAGAGTTTGTCGTTACTTTTCCAAGAGCCTATCATTCAGGGTTCAGCCATGGATTTAATTGTGGGGAGGCGGCAAATATTGCAACCCCTGAATGGTTGAGGGTTGCAAAAGAAGCTGCGATTCGTAGGGCTTCAATCAATTATCCTCCCATGGTGTCTCATTTTCAGCTTCTCTATGAACTTGCACTAACCTTATCTTCAAGGGTACCTATGAGCATCCATACTGAGCCACGAAGCTCCAGACTAAAAGATAGGAAGAGGGGTGAAGGAGAAACCATGGTCAAAGAGCTATTTGTGCAGAATGTAATACAAAACAATGACCTACTTCATGTCCTTCTGGAACAAGGATCTTCTTGTGTACTTCTCCCGGAAAATTCTTCAGAGATACTATGTTCAAATATACGTATTGGATCCCAAATGAGGGTAAAACCCAGGTTGTCACTTGGTTTATGCAGTCCTGAGGAAGCACTGGAACCCTCAAAAATTTTACTTTCTGATGATATCATGCTAGACAGGAATGTGGGGCTCGGGCATTTGACTGGTTTCTGTTCAATGAAAGGAAAATCTAGTTCTGTGTGCGAAGGAAACAGACCGACCTCATTATCTGTGAAATATGGCCAGCATGGAAATGCTGATTTGTGCACTTCCACTTCAGTGACGCAGGACTCCAACAGTGAAAAAGAAAGTACCTGTCAAGGTGCTGGGTTGTTAGATCAGGGACTGTTTTCATGTGTCACATGTGGGATATTGAGCTTTGCATGCGCAGCTGTCATTCAACCCAAAGAATCGGCTGCCCAATACTTCATGTCGGCTGATTGCAGCTTCTTCAATGATTGGACTGTTGGTTCTGGAGTACCTAATGACAGATACACTGTTGCTAATGGGAATGAAAAGGATTTTGAGATGAATTCTTGTTCAGGACGGATTGAAAAGAGTGATCAGGATGGTCTTTATGATGTTCCAGTCCAATCTGGCGATTACCAAGTCCAAGTGGCAGATCAAAGGGTGGAAGTGGTTTCAGATCCGGGAACCCAGAAAGGCATTTCTTCTCTCGATCTATTAGCTTTTGCTTATGGGAATTCATCAGACTCTGAGGAAGAGCAGGTTGAACCTGAGACTCTTGCGAGTGCTGTTGAAAATGACATGGCACACTGTTCACTACTATCTAATCAGAATGAACTCTTTGGATCTTCACGTGGAATCTTCTCATCTAAAAGTAACTTTCTGTGTGATGATTCTGAACTGCATTCACTTGATTCAGACCATCAGGATGGAGCAGCTGTGAGTATCTCGCACTCTTCATCAAGACTTGGTTGTGGGAATGAAGTTTCTGTCCAAATTTCTCGATGCACCAGTGCTTCTGATAGGAAGCATGAATGGACAAGTGCTAATGCCAAAGGTATAAGTCGACAGACTTTGGATTGCCCCCTCGAGAGTGACATCAAGACCCTAGTGTCCCTGGAATCAAATAGTTTAAAGGGTTCATGTAGAGATACAATGGCGATATCTGAAAGGGTGATAATTGGATCTGCTGAAGTCTGTCAGAGTGATGTGGAGATGGAAAGGGTAGAATGTGGTTCTGCCGATTACTCTATGCCGTCTAATTCCTCATGTGCCCTGTCAAATTGTTCTCCAGCCGCCCCCTTTGGTGAAACAACCAAGTTTAGTAATATTGACATATCAAAGAACGCAGACATGTTGCTTATGCACAGATCTGATGAAGAATCTTCTAGAAAGCATATATTTTGTCTTGAACATGCTGTGGAGGTAGAAAAGCAACTTCGACCAATAGGTGGAGTGCATATATTGCTTCTTTGTCATGCAGGGTATTCCAAAGTAGAAGCAGAAGCAAAATCATTGGCAGAAGAATTGGGAATCGATTATCTCTGGAAGGACATTCCATTCAGGGAGGCTACCAAAGAAGATCAAGAGAGGATCCGATCAGCTCTGGATGACGAGGAAGCCATACCCGGTAATGGGGACTGGGCTGTAAAGCTGGGCATCAATCTCTACTACAGTGCCAATCTCAGCCGGTCGCCTCTCTACAGCAAGCAGATGCCGTATAATTCAGTCATATACAAGGCATTTGGCCGTGGTTCTCCTGTCAACTCCCCAACAAAACCTAAGGTTTCGGGGAAGGGGCCTGGTAAGCAGAAAAAGATAGTTGTTGCTGGCAAATGGTGTGGGAAGGTCTGGATGTCAAACCAGGTTCATCCCTACCTAGCTCAGAGAGACACCCAAGAAGAACACTTCAGGAGCTTCCCAGATCCAAAGCTTGAGAGGAAACCAGATATAAGCTGCCGGACCAAACATCCAAGAAAGAACTCGTCGTGTGTAACCACCACTATGGCTAGAAAGCCTGGACGGAAGAGGCAACAAACAGTCGAGAAGGGGGCAACCAAGAAAGCCAAATTCTCCCAACAGGACAACCCATTTGAAACTGCAGAAGATTCACCTGAAAATGATTCCCCTCCACAATGTGGGAGGATTCTCAGAAGTGGGCAAACAAAACATGAGATGCCACCACTTCGTACCAGTAGTGTGAAGAACATCCGAAGATATGATTCAAATTTAAAAGATGAGATTGAAGGTGGACCCAGCACACGCCTTAGAAAAAGATCATCAAAGCCTCCTGAAGAAGTCAAAGTCAAACCAGTGGGTGAGAAGCGAATCAGAAAAAAGAACGCAAAGAAAGCTCCGGCTAGTAGTAATAACAGTTACGACATAATAAAGGACGAGGAAGCAGAATACCAGTGTGATATGGATGGGTGCACTATGGGGTTCAGCTCAAAGCAAGAACTGGTGTTGCACAAGCGCAACATCTGTTCAGTCAAGGGGTGTGGGAAGAAGTTTTTCTCCCACAAATATCTGGTGCAGCACAGGCGAGTACACATGGATGATCGCCCCCTGAAGTGCCCGTGGAAGGGGTGCAAGATGACATTCAAGTGGGCATGGGCTCGGACTGAGCACATCAGGGTGCACACAGGTGCCCGGCCTTATGTGTGCCGTGAGCCAGGTTGTGGCCAGACATTCAGGTTTGTGTCAGATTTCAGCCGTCACAAGCGGAAGACGGGTCATTCAGTGAAAAAGGGTAGAGGATAG 4047 0.4648 MAAAAAAELPPEIPQWLKTLPLAPEYHPTLDEFEDPISYILKIEKEASKYGICKIIPPVSPAPKKTAIANLNRSLAARNPSHNPKSPPTFTTRHQQIGFCPRKTRPVQKPVWQSGETYTVQQFEVKAKNFEKTHLKRSGKKGFSALEIETLFWKASVDKPFRVEYANDMPGSAFVPVNGKKWREAGEAATVGETAWNMRGVSRAKGSLLRFMKEEIRGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKEAAVAFEEVIRVQGFGGEVNPLVTFATLGEKTTVMSPEVLIGAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKEAAIRRASINYPPMVSHFQLLYELALTLSSRVPMSIHTEPRSSRLKDRKRGEGETMVKELFVQNVIQNNDLLHVLLEQGSSCVLLPENSSEILCSNIRIGSQMRVKPRLSLGLCSPEEALEPSKILLSDDIMLDRNVGLGHLTGFCSMKGKSSSVCEGNRPTSLSVKYGQHGNADLCTSTSVTQDSNSEKESTCQGAGLLDQGLFSCVTCGILSFACAAVIQPKESAAQYFMSADCSFFNDWTVGSGVPNDRYTVANGNEKDFEMNSCSGRIEKSDQDGLYDVPVQSGDYQVQVADQRVEVVSDPGTQKGISSLDLLAFAYGNSSDSEEEQVEPETLASAVENDMAHCSLLSNQNELFGSSRGIFSSKSNFLCDDSELHSLDSDHQDGAAVSISHSSSRLGCGNEVSVQISRCTSASDRKHEWTSANAKGISRQTLDCPLESDIKTLVSLESNSLKGSCRDTMAISERVIIGSAEVCQSDVEMERVECGSADYSMPSNSSCALSNCSPAAPFGETTKFSNIDISKNADMLLMHRSDEESSRKHIFCLEHAVEVEKQLRPIGGVHILLLCHAGYSKVEAEAKSLAEELGIDYLWKDIPFREATKEDQERIRSALDDEEAIPGNGDWAVKLGINLYYSANLSRSPLYSKQMPYNSVIYKAFGRGSPVNSPTKPKVSGKGPGKQKKIVVAGKWCGKVWMSNQVHPYLAQRDTQEEHFRSFPDPKLERKPDISCRTKHPRKNSSCVTTTMARKPGRKRQQTVEKGATKKAKFSQQDNPFETAEDSPENDSPPQCGRILRSGQTKHEMPPLRTSSVKNIRRYDSNLKDEIEGGPSTRLRKRSSKPPEEVKVKPVGEKRIRKKNAKKAPASSNNSYDIIKDEEAEYQCDMDGCTMGFSSKQELVLHKRNICSVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCREPGCGQTFRFVSDFSRHKRKTGHSVKKGRG* 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00445 1348 SUPERFAMILY beta-beta-alpha zinc fingers 1303 1337 IPR036236 -
Eupl04g00445 1348 SMART c2h2final6 1255 1279 IPR013087 -
Eupl04g00445 1348 SMART c2h2final6 1285 1309 IPR013087 -
Eupl04g00445 1348 SMART c2h2final6 1232 1254 IPR013087 -
Eupl04g00445 1348 SMART c2h2final6 1315 1341 IPR013087 -
Eupl04g00445 1348 Gene3D Classic Zinc Finger 1253 1339 - -
Eupl04g00445 1348 ProSiteProfiles JmjN domain profile. 23 64 IPR003349 -
Eupl04g00445 1348 FunFam Probable lysine-specific demethylase ELF6 1312 1341 - -
Eupl04g00445 1348 FunFam Probable lysine-specific demethylase ELF6 1282 1311 - -
Eupl04g00445 1348 ProSiteProfiles Zinc finger C2H2 type domain profile. 1315 1346 IPR013087 -
Eupl04g00445 1348 ProSitePatterns Zinc finger C2H2 type domain signature. 1317 1341 IPR013087 -
Eupl04g00445 1348 Gene3D Cupin 16 363 - -
Eupl04g00445 1348 SUPERFAMILY beta-beta-alpha zinc fingers 1271 1313 IPR036236 -
Eupl04g00445 1348 SUPERFAMILY Clavaminate synthase-like 204 361 - -
Eupl04g00445 1348 MobiDBLite consensus disorder prediction 1061 1086 - -
Eupl04g00445 1348 MobiDBLite consensus disorder prediction 1168 1202 - -
Eupl04g00445 1348 MobiDBLite consensus disorder prediction 1087 1103 - -
Eupl04g00445 1348 Pfam jmjN domain 24 57 IPR003349 -
Eupl04g00445 1348 ProSitePatterns Zinc finger C2H2 type domain signature. 1257 1279 IPR013087 -
Eupl04g00445 1348 SMART cupin_9 190 359 IPR003347 -
Eupl04g00445 1348 PANTHER LYSINE-SPECIFIC DEMETHYLASE 15 1281 - -
Eupl04g00445 1348 Pfam JmjC domain, hydroxylase 223 341 IPR003347 -
Eupl04g00445 1348 MobiDBLite consensus disorder prediction 1114 1136 - -
Eupl04g00445 1348 SMART JmjN_1 22 63 IPR003349 -
Eupl04g00445 1348 ProSitePatterns Zinc finger C2H2 type domain signature. 1287 1309 IPR013087 -
Eupl04g00445 1348 MobiDBLite consensus disorder prediction 1061 1220 - -
Eupl04g00445 1348 FunFam Probable lysine-specific demethylase ELF6 16 363 - -
Eupl04g00445 1348 ProSiteProfiles JmjC domain profile. 193 359 IPR003347 -
Eupl04g00445 1348 ProSiteProfiles Zinc finger C2H2 type domain profile. 1255 1284 IPR013087 -
Eupl04g00445 1348 ProSiteProfiles Zinc finger C2H2 type domain profile. 1285 1314 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00445 Eupl-Chr4 7011609 7022841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00445 893 994 C2H2 Transcription Factor Family AT5G04240 35.294 5.53e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g00445 JmjC 1.8e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00445 - - tss:122670835 1840.08