Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00444 ATGGGAGACAGTGAAGAGTATTCGGTGTCGAAACCTCAGGAGGAGGTGAGGGAGGAGGAGTTAGGGTCTCCTTTATCTTCTCCTGCGGCTAGTTCTGCTCCTGCACCTGCATCCGATCTTGCTCCTGCTAGTCTTGAAACCTTAGATGGGGAGTTACAGAAACTAGGGTTAGAAGAGAACGAGAACGAGAACGAGAATGAGAACGAGAACGAGAACGAGAACGAGAATGAGAACGAGAACGAGAATGAGAACGACAACGACAACGAGAGTCCAGAAGGGGAGACTGTCGTGAAGGAGGAGGAAAACAGAAGATTTCAAAATCATCCTCAGAGACCTGACGAGCCCGATTGCTCCTTTTATATTAGGACCGGAACATGTCGTTACGGATTGAACTGCAGATTCAATCACCCTTCCGGAAGAAAAAACCAGGTGCGATCGTCATCGCACTCGCCGGAATCAGTTCAGGAAAAGGAGAAGGAAAAGGAAGAATACCCAGAAAGAACAGGGCAACCAGAATGCAAGTATTACCTAAGAACGGGGGGTTGTAAATTTGGAAAAGCTTGTAGATACCATCATCCTCGAGAAAAAAGTGTGGTTGGACCACCACTAGAGTTTAACTTTCTGGGTCTGCCAATCCGACCGGGAGAGAAAGAATGCCCCTTCTACATGCGTACTGGTTCTTGCAAATTTGCAATTAATTGCAGGTTTCATCATCCTGATCCGACCGCCGCGGGAGGATCGGATCCTCTTCCAGGATATCGTGATGGTGGTTCTGTTCCATTCCACTCATCGGGCATTTCACAACCAGTTGTAACATCCTGGTCTTTACCGAGAACCTCAAATGAAACTGTTCCTTACTTAGATGCGTCCCCATCATATGCGCCAGTGATGCTTTCACCTCCTCAAGGGATGCCTCCAAATCTGGAATGGAATGGATATCAGGCTCCAGTAAGCCTACTGTATCCACCAGAAGGGAATATACACCCTACAACTTCTGTTCTGAACGATTCCACCAAGAAAGCAGATAGCTCTATGCATTATCAACAGCAGATGACGGTTGATGAATTCCCTGAGAGACCAGGCCAACGTGAGTGTCAGTACTTCATGAAAAATGGGGACTGTAAATATAGATCAAGTTGTCGGTTTCATCATCCAAAGAACCGGATCCCAAAATCACCTTCCCTCAGTCCCCTGGGCTTGCCTTTAAGACCAGATCAAATAGTCTGCACGCATTATAGCCGCTATGGCATTTGCAAGTATGGGCCTGCATGTAAATATGACCATCCACCAAATTATGGCACTTCAGCTTCTTCAGTTATGTCTGTCTCAGGTCAGCCTCCATCCTTTGACAACTCCGCAACTTTCGGAGGGGCTAGAATGGCAGGATGTGGAAATGGAAGAGAGACTCGAGAGGCTCTAATCCAGCAGTCTGTGTAA 1437 0.4718 MGDSEEYSVSKPQEEVREEELGSPLSSPAASSAPAPASDLAPASLETLDGELQKLGLEENENENENENENENENENENENENENDNDNESPEGETVVKEEENRRFQNHPQRPDEPDCSFYIRTGTCRYGLNCRFNHPSGRKNQVRSSSHSPESVQEKEKEKEEYPERTGQPECKYYLRTGGCKFGKACRYHHPREKSVVGPPLEFNFLGLPIRPGEKECPFYMRTGSCKFAINCRFHHPDPTAAGGSDPLPGYRDGGSVPFHSSGISQPVVTSWSLPRTSNETVPYLDASPSYAPVMLSPPQGMPPNLEWNGYQAPVSLLYPPEGNIHPTTSVLNDSTKKADSSMHYQQQMTVDEFPERPGQRECQYFMKNGDCKYRSSCRFHHPKNRIPKSPSLSPLGLPLRPDQIVCTHYSRYGICKYGPACKYDHPPNYGTSASSVMSVSGQPPSFDNSATFGGARMAGCGNGRETREALIQQSV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00444 478 PANTHER PROTEIN PHOSPHATASE RELATED 20 440 - -
Eupl04g00444 478 MobiDBLite consensus disorder prediction 151 168 - -
Eupl04g00444 478 MobiDBLite consensus disorder prediction 91 111 - -
Eupl04g00444 478 MobiDBLite consensus disorder prediction 1 118 - -
Eupl04g00444 478 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Eupl04g00444 478 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Eupl04g00444 478 Coils Coil 45 88 - -
Eupl04g00444 478 ProSiteProfiles Zinc finger C3H1-type profile. 111 139 IPR000571 GO:0046872
Eupl04g00444 478 SUPERFAMILY CCCH zinc finger 402 428 IPR036855 GO:0046872
Eupl04g00444 478 MobiDBLite consensus disorder prediction 137 168 - -
Eupl04g00444 478 SUPERFAMILY CCCH zinc finger 114 139 IPR036855 GO:0046872
Eupl04g00444 478 Gene3D - 81 147 - -
Eupl04g00444 478 Gene3D - 354 445 - -
Eupl04g00444 478 ProSiteProfiles Zinc finger C3H1-type profile. 403 431 IPR000571 GO:0046872
Eupl04g00444 478 MobiDBLite consensus disorder prediction 62 90 - -
Eupl04g00444 478 SUPERFAMILY CCCH zinc finger 215 240 IPR036855 GO:0046872
Eupl04g00444 478 SUPERFAMILY CCCH zinc finger 171 195 IPR036855 GO:0046872
Eupl04g00444 478 Gene3D - 154 243 - -
Eupl04g00444 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 194 IPR000571 GO:0046872
Eupl04g00444 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 239 IPR000571 GO:0046872
Eupl04g00444 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 361 386 IPR000571 GO:0046872
Eupl04g00444 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 113 137 IPR000571 GO:0046872
Eupl04g00444 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 408 430 IPR000571 GO:0046872
Eupl04g00444 478 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Eupl04g00444 478 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Eupl04g00444 478 SMART c3hfinal6 359 386 IPR000571 GO:0046872
Eupl04g00444 478 SMART c3hfinal6 403 430 IPR000571 GO:0046872
Eupl04g00444 478 SMART c3hfinal6 111 138 IPR000571 GO:0046872
Eupl04g00444 478 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
Eupl04g00444 478 SUPERFAMILY CCCH zinc finger 362 388 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00444 Eupl-Chr4 6999239 7005879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00444 106 428 C2H2 Transcription Factor Family AT5G18550 41.888 2.24e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl04g00444 zf-CCCH 2.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00444 - - nnu:104591588 542.732