Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00419 ATGGAGGTGGGTATGTCTCTAAACGCACTGGTTCGACTTCCCTTGTCGACGTCGAGAACCCATGAAGATGTGCTCTTCAAGCACTCTCTTTTCTCTACTCGGACTGGCAAAAAACAGCAGCAAAGGCAGCATGTTTTAGTGGTTCAAGCGAAGGGGAAAAGAGGAATGCAAGCTCGCCAATTCAAACGCCCTCCCCCTCCTCTTTTGCCCAAAATCGAAGACGATGGCAACCCGAAATTCGTCATCTTCATCCGTATGGCAAATGTTTATCTTTGGTACCCGCTTAGTCTTATAACGGGTGGGACGACTGCGAAGATCATGGTCGCAGCCAAAGATAATTTTCTTGGAAAATATATTTACAAGGATACAATTGCGAGGAATCTCGCAGCTGTGGTTTACAAGGATGAGAAGGAGATACAAAAGACAGCATTTAGGCAGCATCGTGTATTGCGATCATGTTCTGAGTTTAGATATGGCTACAAACTTCTTGAAAATAAGAACTTGAGAGCTGCACTTTCTTCAACAGATGTTATTGAGCTTCCAACGCAAGATGAGCTCAAAACTGTGCTTGACAAAGTAAAGGACTTCTTTGGGGATGCCAAAGAATCATTCGGGAAGCTGACAGCCCTAAATCCCACAAGCGAGGAGTCCGAAGAAGAAATGAAAGAAAAATCCAAGTGGTCCAAGATTGCCGCGCATTTTCCCGGCCGTACAGATAATGAAATCAAGAACCACTGGAATACTCGAATTAAGAAGCGATTGAAGCTCCTTGGTTTAGACCCTGTGACACACAAACCCATTGAACACACTGAAAAATCTGACACAAAAGGTGAAATAATTTCAGAATTTAATGAAAAAGAAGAGAACAACTTGAAGGTTGAGTTGTTAAACAATCCGGTCTCGGAGGATTTTCCAGTGATAGAGAAGAAACAAGAAGAATTTGGATTGGGCTTTGATGATACAATCAATATTTCGCAGAGTTACGAAATGTTGTGGGAAAGCTTGGATGTGGAATCGATGATCATGAACTCAGGGACCAATCCCACCAACACTAGTAGTACTAGTCCTTCATTTTCTTTGGAAGACTCACTCAAATCTTCAATGGGTGAAACCTCCTCTCTGAAAGAAGACTCTCAACATTGGGTTGATAGTGTAGATTCTATCCTCTCATGGGATGGCTTTCATCATCTACAAGAAATTTTCCCTTGGGAAAATCACCAATAA 1224 0.4232 MEVGMSLNALVRLPLSTSRTHEDVLFKHSLFSTRTGKKQQQRQHVLVVQAKGKRGMQARQFKRPPPPLLPKIEDDGNPKFVIFIRMANVYLWYPLSLITGGTTAKIMVAAKDNFLGKYIYKDTIARNLAAVVYKDEKEIQKTAFRQHRVLRSCSEFRYGYKLLENKNLRAALSSTDVIELPTQDELKTVLDKVKDFFGDAKESFGKLTALNPTSEESEEEMKEKSKWSKIAAHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEHTEKSDTKGEIISEFNEKEENNLKVELLNNPVSEDFPVIEKKQEEFGLGFDDTINISQSYEMLWESLDVESMIMNSGTNPTNTSSTSPSFSLEDSLKSSMGETSSLKEDSQHWVDSVDSILSWDGFHHLQEIFPWENHQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00419 407 SUPERFAMILY Homeodomain-like 224 255 IPR009057 -
Eupl04g00419 407 PANTHER PROTEIN HHL1 CHLOROPLASTIC 1 226 IPR045388 -
Eupl04g00419 407 Pfam Myb-like DNA-binding domain 225 248 IPR001005 -
Eupl04g00419 407 SMART sant 182 252 IPR001005 -
Eupl04g00419 407 MobiDBLite consensus disorder prediction 343 375 - -
Eupl04g00419 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 254 IPR017930 -
Eupl04g00419 407 MobiDBLite consensus disorder prediction 343 376 - -
Eupl04g00419 407 ProSiteProfiles Myb-like domain profile. 219 250 IPR001005 -
Eupl04g00419 407 Pfam Protein HHL1-like 66 197 IPR045388 -
Eupl04g00419 407 CDD SANT 227 248 IPR001005 -
Eupl04g00419 407 Gene3D - 182 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00419 Eupl-Chr4 6726188 6734010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00419 225 288 MYB Transcription Factor Family AT5G14340 57.971 1.62e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl04g00419 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00419 - - nnu:104591617 370.933