Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00415 ATGGCTCCTGACCTCTCCATGCCAAACGAGTTCTATAACGATGTGAGGAGTGATGAGTCGGGTGGACTTGAGCTCAGTCTTTCAGCTATGGCTTTCTATCCCTTCCCATGTCTTCCCAGATTGGAGAGCCATGGTTCCACTTGGTTCCTCCCCTCAGATGATATCAGGAACCATAAGAGGCTAAAGCTGACGCTAAGTGGTGACGGATCAATCGGAAATAATAGTAGACTTTATAGTGGCGGCGGCAGCAATATCGGCCATAGCGATGGTACTAGTAACTTGACTAGCTTGCCGAAGCTCCAGTTCCGGGATCATATATGGACTTACACTCAGAGATACCTGGCAGCTGAGGCCATCGAAGATCCAGTAGCTGCCATGACTGGAGATGAGGAGGATGGAGTGGAAGAAGGGAATGGAAATGAGATGTGGCTGGTGCAAGTACTCATTTCTTGTGCCGAGGCTGTGGCCTGTCGAGATAGATCACATGCCTTGACATTATTATCTGAGCTTCGAGCTAATGCATTGGTCTTTGGCACTTCCTTCCAGCGTGTTGCTTCTTGCTTCGTTCAAGGCCTTGCCGACCGTCTCTCGCTGGTTCAATCACTTGGGGCGGTAGGCATTGTATCCCCCATGATGAATACAGTGACCGTTGCATCGGAGAAGAAGGAAGAGGCCTTAGGCCTTGTTTATGATGTTTGCCCGCATATTCAGTTTGGTCACTTTGTGGCCAACACATTGATATTGGAAGCCTTTGAGGGAGAGAGTTTGGTTCATGTGGTGGACTTGGGCATGACCCTGGGCCTATCACATGGCCACCAGTGGCGCAGGCTAATCCACAGCCTCGACACTTGCGCAGGCCAACTGCCTCGCCGTCTTCGCATAACTGGTGTCGGCCATTGTGCTGACCAACTTCAAACCATCGGCGATGAGCTAGAGGTCTACGCGAAAAGTCTGGGAATAAATTTTGAGTTCTCAGTTGTGGAAAGCAGCTTAGAGAACCTGAGGCCTGAGGACTTCAAGGTCTGTGACGGTGAGGTTCTTGTTGTCAATAGCATCCTTCAGTTGCATTGCGTGGTGAAAGAGAGCCGTGGAGCTCTAAACTCAGTCCTACAGATAATTCACGAGCTCTCGCCGAAGGTCCTAGTTCTAGTCGAGCAGGACTCAAGCCATAACGGACCATTCTTTCTAGGGAGGTTTATGGAAGCATTGCATTACTACTCTGCAATCTTCGACTCACTTGATGCTACGTTACCCAAGTATGACACAAGACGTTCCAAGGTGGAGCAATTCTATTTTGCAGAGGAAATTAAGAACATAGTGAGCTGTGAGGGGCCAGCGAGGGTGGAGCGGCATGAAAGGGTGGACCAGTGGCGTAGGAGGATGAGCCGGGCTGGGTATAAACCCACACCCATTAAGATGATAGCTCAGGCCAATCAATGGCTGGGGAACGCTAACGTTTGCGAAGGTTACACAATTGTGGAAGAGAAGGGGTGTTTGGTATTTGGGTGGAAGTCAAAGCCCATTGTTGCAGCTTCTTGCTGGAAATGCTAA 1551 0.4984 MAPDLSMPNEFYNDVRSDESGGLELSLSAMAFYPFPCLPRLESHGSTWFLPSDDIRNHKRLKLTLSGDGSIGNNSRLYSGGGSNIGHSDGTSNLTSLPKLQFRDHIWTYTQRYLAAEAIEDPVAAMTGDEEDGVEEGNGNEMWLVQVLISCAEAVACRDRSHALTLLSELRANALVFGTSFQRVASCFVQGLADRLSLVQSLGAVGIVSPMMNTVTVASEKKEEALGLVYDVCPHIQFGHFVANTLILEAFEGESLVHVVDLGMTLGLSHGHQWRRLIHSLDTCAGQLPRRLRITGVGHCADQLQTIGDELEVYAKSLGINFEFSVVESSLENLRPEDFKVCDGEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDATLPKYDTRRSKVEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGYKPTPIKMIAQANQWLGNANVCEGYTIVEEKGCLVFGWKSKPIVAASCWKC* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00415 516 ProSiteProfiles GRAS family profile. 135 515 IPR005202 -
Eupl04g00415 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 510 IPR005202 -
Eupl04g00415 516 Pfam GRAS domain family 144 515 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00415 Eupl-Chr4 6690568 6692169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00415 144 516 GRAS Transcription Factor Family AT1G66350 36.074 1.47e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Eupl04g00415 GRAS 4.7e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00415 - - msin:131241539 738.799