Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00402 ATGTATTTGTCTGAGAAGCCACGTCCAATTGATTTTTATAAGGAGGAAGGGAGAGATATGATGATTGAAGTGGTCGGCAACGGCGGGTTACAGCCTCAGCAACAACAACAGCAGCAACAACAGCAGATGATTCTGGCCGAAAGCAGTGGGGAAGACCATGAGGTCAAGGCGCCAAAGAAGCGAGCGGAGACTTGGGTTCAAGAGGAAACCCGAAGCCTTATCAGTTTTCGGAGAGAATTGGACGGACTTTTCAACACTTCAAAGTCAAACAAGCATCTTTGGGAGCAGATTTCATCCAAGATGAGGGACAAGGGGTTTGATCGGTCAGCGACCATGTGCACCGATAAGTGGAGGAACCTGTTAAAGGAGTTCAAGAAGGCAAAGCACCACGACAGAGGGAGTGGTTCAGCAAAGATGTCGTACTACAAGGAACTCGAGGAATTACTCAGGGAGAGGAACAAGAATGCACCTTACAAGAGTCCAACACCATCAAAGGTTGATTCCTACATTCAGTTCTCAGATAAAGGTCTTGAGGATGCTAGTATTCCATTTGGATCTGTGGAAGCTAGTGGCAGGTCAACACTCAATCTCGAAAGGCGTTTGGATCACGATGGACACCCTCTTGCCATCACAGCAGCTGATGCAGTTGCAGCCAGTGGAGTTCCCCCATGGAATTGGAGAGAGACTCCTGGAAATGGTGGAGAAAGCAACTCCTCATATGGTGGGCGGGTTATTTCAGTCAAGTGGGGGGGCTGCAGTAGAAGGATCGGTATCGATGGCACCGCAGATGCCATCAAGGAGGCAATCAAATCCACTTTTGGATTAAGAACCAGGCGGGCATTTTGGTTGGAGGATGAAGATGAGGTTGTTCGGAGCCTTGACCGGGACATGCCTCTGGGGACCTACACTCTTCACTTGGACGAGGGAATTACAATAAAATTTTGCCTCTACGACGAATCTGACCGCATACCTGTTCGTGCTGAAGAAAAGACACTTTACACTGAAGATGACTTGCGTGATTTCCTTACCCGCCGCGGTTGGACTGGTCTTAGAGAATTGAATGGCTTCAGAAGCATGGATACTCTGGATGATCTCCGTCCTGGAGCAATGTATCAAGGTGTGAGATTGATGGGCGACTAG 1140 0.486 MYLSEKPRPIDFYKEEGRDMMIEVVGNGGLQPQQQQQQQQQQMILAESSGEDHEVKAPKKRAETWVQEETRSLISFRRELDGLFNTSKSNKHLWEQISSKMRDKGFDRSATMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKELEELLRERNKNAPYKSPTPSKVDSYIQFSDKGLEDASIPFGSVEASGRSTLNLERRLDHDGHPLAITAADAVAASGVPPWNWRETPGNGGESNSSYGGRVISVKWGGCSRRIGIDGTADAIKEAIKSTFGLRTRRAFWLEDEDEVVRSLDRDMPLGTYTLHLDEGITIKFCLYDESDRIPVRAEEKTLYTEDDLRDFLTRRGWTGLRELNGFRSMDTLDDLRPGAMYQGVRLMGD* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00402 379 Gene3D - 65 127 - -
Eupl04g00402 379 PANTHER FI21293P1 33 369 - -
Eupl04g00402 379 SMART sant 61 123 IPR001005 -
Eupl04g00402 379 FunFam trihelix transcription factor GT-1 65 127 - -
Eupl04g00402 379 Pfam Myb/SANT-like DNA-binding domain 64 148 IPR044822 -
Eupl04g00402 379 ProSiteProfiles Myb-like domain profile. 57 121 IPR001005 -
Eupl04g00402 379 MobiDBLite consensus disorder prediction 26 61 - -
Eupl04g00402 379 MobiDBLite consensus disorder prediction 221 240 - -
Eupl04g00402 379 MobiDBLite consensus disorder prediction 28 47 - -
Eupl04g00402 379 CDD GT1 63 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00402 Eupl-Chr4 6494580 6512208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00402 19 375 Trihelix Transcription Factor Family AT3G25990 64.770 7.85e-168 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl04g00402 Myb_DNA-bind_4 2.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00402 - - nnu:104591637 678.322