Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00400 ATGGAGATCTCTTTAAGGGTTGTCAATGTAGCATGTTTATCACTGTTATTGATATGGGTACTGGTAGAATTTTTTAAACAGAGGAGGAGAGATATAGAGGAGGATGAAGAGTTAAAACAGGAGAGCACACACAGAAAATCTACATTTATGACAAAGATCACTGCTATTTCTAACGTTTTAATCTCTCTGTCCTATCTGGGTTTGTGTTTTTATGAGGTTTGGAAGTTGAAAACTGTCTACATAGAATCTGTTTTTCGGGCAATAATTTGGATTTTAGTAACAGTATTTGTGGTTTATTTCGAGAACAGAACCATTAGAGAAGACAAGAGGTGGCCTTTAGTCATTAATTTCTGGTGGGTCTTTTCCAGCATTTTCGATACCTTCTCTGTATCCATCTATATCATCACCCATTTCAAATCCACACTTTTGCCAGATTTTCTCCCAGAGGCTAATTTCACTGATTTTGCTTCATTTCCCCTGTCCATACTGCTCTGTTTCAATGCTCTCCATTTCAATTATACCAAGAAACTTCAAGAAATCAAACACCCGCTACTCCAGAAAGAGGATGAAGGTGTCACTGGAGATGTCGATGCCTTTGCCAACGCTGGTATTTGGAGCCGACTTACATTCCAGTGGCTAAACCCGCTCTTTGCAAAGGGTCGGGCTCAAAAACTTGAACTACCCCATATTCCTTCCATTCCCAAATCCGAAACGGCAAAGAAATCTTTCTCCTTGTTAGAAGAATCAGTTCGGAGACAGAAGACTGAAGCCTTCTCTCTGCCGAAAGCTATTATCCATGCAATATGGAGGCCTCTGGCCATAAATGCAGTTTTTGCTGGTATAAACACAATTGCTTCTTATACGGGTCCCTTCCTAATCACAAACTTTGTCAATTTCCTATCGGGAAAACATGATGGTTCAAGCCATCGCTATGGACTTACTCTTGCATTCTTTTTCTTCTTCTCAAAGACAGTGGAGTCACTGTCACAGCGACAATGGTACTTTGGTGCTCAGCGGATTGGTATTCGAGTCCGAGCAGCTCTTATGGTCGCAATTTATAGGAAGGCTCTTTCGATCAAGTACTCCGGCCTAAGCAATGGCAAAATTATAAATTTCATCAATGTGGATGTCGAGAGGATTGGAGACTTCTGCTGGTACGTTCATGGAATCTGGTTGCTCCCCATCCAGGTTTTTCTAGCTCTTATGATCCTGTACAGGAATCTTGGTGGGGCACCCTCCATCGCTGCGCTCTTCGCCACAATTTTGGTGATGGTAAGCAACACCCCGTTGGCCAATTTGCAAGAAAGGCTCCACTCTAGGATCATGGAAGCTAAGGACTCGAGAATCAAAGCAACTTCAGAGACTCTGAAGAGCATGAGAGTCTTGAAGCTTCATTCTTGGGAAACTGCCTATTTGAAGAATATTCTTAACCTTAGAGAGACTGAGAGAAGTGGGTTGAAGAGATATCTCTATACGTGCGCTGCTGTTGCCTTTCTCTTTTGGACTTCACCAACATTAGTTTCGGTCGCCACTTTTTGTGTTTGCATTGTAGTAAAAACACCATTAACATCCGGTGGGGTTCTGTCAGCCCTAGCGACTTTTCGAATACTACAAGAACCCATCTATAATCTCCCAGAGCTCATTTCCATGATCGCACAAACAAAGGTCTCGATTGATCGGATCCAAGACTTCATTGGAGAAGAAGATCAAAAGAAGCTGATACCCAATTATACTCCAAAAGCATCCAATGTCGCTATAGAGATTGAGACCGGGGAATACACATGGGAAACAAGTAATATGAATTTGAAGAAGCCCACACTCATAATCACTGAGACGATAAAAATCATGAAGGGTGATAAGGTCGCGGTGTGTGGGTCTGTCGGTTCAGGGAAATCGAGCTTACTCTGCAGTATACTTGGCGAGATTCCAAGGATTTCTGGGGCAGAAATTAAGGTTTACGGTTCAAAGGCTTATGTCCCACAGAGTGCTTGGATTCAGACGGGTACGGTTAGAGACAATGTACTGTTTGGTAAGGAGATGGAGAGAGGTTTCTATGAGGATGTTTTGGAGGGATGTGCTTTAAATAGGGATATGGAGATGTGGGTTGATGGGGATTTGAGTGTGGTGGGAGAGAGAGGGATGAATCTAAGTGGAGGGCAGAAGCAGAGGATTCAGCTGGCACGAGCCATCTATAGTGATTCAGATGTTTATTTGCTAGATGATCCTTTCAGCGCTGTGGATGCACATACTGGAGCACATCTTTTCAAGGAATGCCTAATGCAACTATTGTCTCCAAAAACCGTCATTTATGTCACCCATCAATTGGAGTTCTTGGATGCTTCAGACCTCGTTCTGGTAATGAAAGATGGGAAGATTGTTCAGTCAGGTAAATATGAACATCTAATTGCTGATCCCAATGGTGAGCTTGTCAGACAAATGGCTGCCCACAGCCAATCTCTAAGCCAAGTAACCCAACCCCAAGACTACAGATTCTTAACCTGTGGCACCCAGATGAATCAAACTGAGGTCACAGAAGAAAAAACTGACGACCCCAATGGCAATGGGAGGCATTCAGAGAAAATTCATGATGATGAAACAGAATCTGGTAGAGTCAACTGGCAAGTTTACTCGACCTTTGTGACTTCAGCATATAAAGGAGCTCTTGTTCCAGTGATCCTTCTCTGTCAAGTTCTCTTCCAGGGATTACAGATGGGCAGCAATTACTGGATCGCTTGGGCAACCGAGGAGGAAGACAGGGTAAGCAGAGAGAAGTTGATCGGGGTGTTTATTTTGTTGTCTGGTGGGAGCTCCATTTTCATCTTGGGAAGGGCTGTTTTGCTTGCAACCGTTGCCATCGAAACAGCCCAGAGGCTCTTCCTTGGCATGATTAACTCTGTTTTCCGAGCTCCCATTTCATTCTTCGATTCCACACCCTCGAGTCGGATACTCAACAGGTCTTCCACAGACCAGAGCACAGTGGACACAGACATTCCCTACAGACTAGCAGGATTGGCATTTGCACTTGTCCAGCTCTTGAGCATCATCATCCTTATGTCTCATGTTGCCTGGCAGGTCTTCCTTCTCTTCCTTGCCGTCCTTGCAATCTCCATATGGTATCAGGCTTACTACATCACCACAGCCAGAGAACTAGCCAGGATGGTGGGGATAAGAAAATCTCCAATCCTGCACCACTTCTCAGAGTCCATTGCTGGGGCTGCAGCAATCCGCTGCTTTAATCAGAAAGATCGCTTTCTTGCAAAAAGTCTCAACTTTATTGATGATTACTCTCGCCTCACTTTCCACAATTCTGCTACAATGGAATGGCTCTGTGTTCGAATCAACTTTCTCTTCAACCTTGTCTTCTTCCTTGTTCTAATTATCTTGGTGAGCCTGCCAAGGGCAGCCATTGACCCTTGTTTGGCAGGAATGGCAGCTACCTATGGTTTGAACCTAAATGTTCTACAGGCTTGGGTGATATGGAATCTCTGCAACGTTGAGAACAAGATGATCTCAGTAGAGAGAATTCTTCAATTTTCGAACATTCCAAGTGAAGCTCCATTGGAGATTGAAGGGTGCAGACCAGAACCAGAGTGGCCAATGAATGGAACCATCGAGCTTGACAATCTCCATATCCAATATAGCCCTTCGCTCCCCATGGTTCTTAAAGGGATCACTTGCACATTCCCGGGAGAGAAGAAGGTTGGAGTCGTAGGCAGGACAGGCAGTGGGAAGTCCACTCTCATCCAAGCTATATTCAGGGTGGTGGAGCCCTCAGAAGGAAGGATCCTGATTGACGGAGTAGATATTTGTAAGATGGGTTTGCAGGATTTGAGGTCTAGATTGAGTATAATTCCGCAAGACCCAACTCTGTTTCATGGAACCATGAGAACTAATCTGGATCCTCTAAAGCAGCATTCGGATTCCGAAATCTGGGAGGCTCTAAACAAGTGTCATCTTGGGGAGATAGTAAGGCAAGATCAGAGGCTTCTTGATGCACCAGTTGCAGAAGATGGAGAGAATTGGAGTGTGGGACAAAGGCAGTTGGTTTGCCTGGCTAGGGTGTTGCTAAAAAAGAGAAGGATTCTGGTGTTGGATGAGGCTACAGCTTCGGTGGATACTGCAACAGATAATGTAATTCAGAAGACAATAAGAGAACAAACCAGTAGTTGCACAGTTATCACTGTGGCCCACCGAATACCTACTGTGATTGACAGCGACTTGGTTCTTGTGCTTGATGAAGGCAAAGTTGTGGAGTACGGCTCCCCAGATCAGTTACTCAAAGATAACTCATCTGCATTTTCAAAGTTGGTGTTGGAGTTCTTAAGAAGATCGTCCAAGCGTAATCACCACATGGCCCTACATGGAGAGAAGGGTGGGGATGATGCATGA 4389 0.4441 MEISLRVVNVACLSLLLIWVLVEFFKQRRRDIEEDEELKQESTHRKSTFMTKITAISNVLISLSYLGLCFYEVWKLKTVYIESVFRAIIWILVTVFVVYFENRTIREDKRWPLVINFWWVFSSIFDTFSVSIYIITHFKSTLLPDFLPEANFTDFASFPLSILLCFNALHFNYTKKLQEIKHPLLQKEDEGVTGDVDAFANAGIWSRLTFQWLNPLFAKGRAQKLELPHIPSIPKSETAKKSFSLLEESVRRQKTEAFSLPKAIIHAIWRPLAINAVFAGINTIASYTGPFLITNFVNFLSGKHDGSSHRYGLTLAFFFFFSKTVESLSQRQWYFGAQRIGIRVRAALMVAIYRKALSIKYSGLSNGKIINFINVDVERIGDFCWYVHGIWLLPIQVFLALMILYRNLGGAPSIAALFATILVMVSNTPLANLQERLHSRIMEAKDSRIKATSETLKSMRVLKLHSWETAYLKNILNLRETERSGLKRYLYTCAAVAFLFWTSPTLVSVATFCVCIVVKTPLTSGGVLSALATFRILQEPIYNLPELISMIAQTKVSIDRIQDFIGEEDQKKLIPNYTPKASNVAIEIETGEYTWETSNMNLKKPTLIITETIKIMKGDKVAVCGSVGSGKSSLLCSILGEIPRISGAEIKVYGSKAYVPQSAWIQTGTVRDNVLFGKEMERGFYEDVLEGCALNRDMEMWVDGDLSVVGERGMNLSGGQKQRIQLARAIYSDSDVYLLDDPFSAVDAHTGAHLFKECLMQLLSPKTVIYVTHQLEFLDASDLVLVMKDGKIVQSGKYEHLIADPNGELVRQMAAHSQSLSQVTQPQDYRFLTCGTQMNQTEVTEEKTDDPNGNGRHSEKIHDDETESGRVNWQVYSTFVTSAYKGALVPVILLCQVLFQGLQMGSNYWIAWATEEEDRVSREKLIGVFILLSGGSSIFILGRAVLLATVAIETAQRLFLGMINSVFRAPISFFDSTPSSRILNRSSTDQSTVDTDIPYRLAGLAFALVQLLSIIILMSHVAWQVFLLFLAVLAISIWYQAYYITTARELARMVGIRKSPILHHFSESIAGAAAIRCFNQKDRFLAKSLNFIDDYSRLTFHNSATMEWLCVRINFLFNLVFFLVLIILVSLPRAAIDPCLAGMAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNIPSEAPLEIEGCRPEPEWPMNGTIELDNLHIQYSPSLPMVLKGITCTFPGEKKVGVVGRTGSGKSTLIQAIFRVVEPSEGRILIDGVDICKMGLQDLRSRLSIIPQDPTLFHGTMRTNLDPLKQHSDSEIWEALNKCHLGEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASVDTATDNVIQKTIREQTSSCTVITVAHRIPTVIDSDLVLVLDEGKVVEYGSPDQLLKDNSSAFSKLVLEFLRRSSKRNHHMALHGEKGGDDA* 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00400 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 588 814 IPR003439 GO:0005524
Eupl04g00400 1462 Gene3D - 564 831 IPR027417 -
Eupl04g00400 1462 FunFam ABC transporter C family member 5 853 1185 - -
Eupl04g00400 1462 CDD ABCC_MRP_domain1 586 791 - -
Eupl04g00400 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 273 553 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl04g00400 1462 MobiDBLite consensus disorder prediction 843 865 - -
Eupl04g00400 1462 FunFam Multidrug resistance-associated protein 4 573 830 - -
Eupl04g00400 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 200 1442 - -
Eupl04g00400 1462 Pfam ABC transporter transmembrane region 907 1130 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl04g00400 1462 Pfam ABC transporter transmembrane region 273 540 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl04g00400 1462 MobiDBLite consensus disorder prediction 842 865 - -
Eupl04g00400 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1196 1430 IPR027417 -
Eupl04g00400 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1204 1438 IPR003439 GO:0005524
Eupl04g00400 1462 SUPERFAMILY ABC transporter transmembrane region 891 1184 IPR036640 GO:0005524|GO:0016020
Eupl04g00400 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 891 1130 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl04g00400 1462 Gene3D - 1187 1440 IPR027417 -
Eupl04g00400 1462 CDD ABCC_MRP_domain2 1202 1422 - -
Eupl04g00400 1462 Pfam ABC transporter 1221 1369 IPR003439 GO:0005524
Eupl04g00400 1462 ProSitePatterns ABC transporters family signature. 716 730 IPR017871 GO:0005524|GO:0016887
Eupl04g00400 1462 SUPERFAMILY ABC transporter transmembrane region 266 569 IPR036640 GO:0005524|GO:0016020
Eupl04g00400 1462 Gene3D ABC transporter type 1, transmembrane domain 854 1185 IPR036640 GO:0005524|GO:0016020
Eupl04g00400 1462 Pfam ABC transporter 613 743 IPR003439 GO:0005524
Eupl04g00400 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 804 IPR027417 -
Eupl04g00400 1462 SMART AAA_5 1230 1421 IPR003593 GO:0016887
Eupl04g00400 1462 SMART AAA_5 617 791 IPR003593 GO:0016887
Eupl04g00400 1462 CDD ABC_6TM_ABCC_D1 274 561 IPR044746 GO:0140359
Eupl04g00400 1462 FunFam ABC transporter C family member 3 1187 1439 - -
Eupl04g00400 1462 CDD ABC_6TM_ABCC_D2 889 1179 IPR044726 GO:0140359
Eupl04g00400 1462 Gene3D ABC transporter type 1, transmembrane domain 262 563 IPR036640 GO:0005524|GO:0016020
Eupl04g00400 1462 FunFam ABC transporter C family member 10 256 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00400 Eupl-Chr4 6472260 6480181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00400 580 825 Calmodulin-binding Proteins AT2G36910 25.926 2.50e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00400 - - nnu:104592959 2224.13