Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00383 ATGGAAACTGATTCAGACTCAGACGGTTCTCACATCTCTGCAACTCCGCCAAGAGAACCAAAGCCTTCACAAGCTCCTCTAATTACTCTTATTGCTTCTTATAAACCTAAGGCTAGGGTTAGGGTTCCTTCCCGCTCAAACCTCATTTCAAATCGCAAATCCACTTCGAATCACAAACCCCTCAAACCCAAGCCCAAAACCAAAACTGAAACCAAAACCGAAGACGAAACCTCTGAAAAGGATCCACCACCAGAACCTCTCCGCTCCTCAGATTTATCAGATCTCTCTGGTTTATCGGTGCAGAAGCGCCGTTTGTCCGATCGAAACCATGATGTTTCGGCACCCTTCTCGACGGAAAATCTTCCGTCGCGTTTAATCGGCAGGTCTGCAACCTTCTCGAAGATCCGGCGGCCAAATTGGAATCCAGAATCGACTGATAAAGATCCAGTGCTCCCATATGTGTCAATTCCACAACCTGAGGTTGGTAGCTGTGATCGTGTCGAGGGTGCAAGGAATCGTGCTGATTCGGTCACCCCAGATACCATTAGCAAAGCTGTTCACGGTGGAGATTCCATCAAAGCTGTGAGGAAACATCCTAATTCGATAGCAAGTGAGGTACGTCCAGTGCCATTGAAACGGCCGAAATCTGTTGGCGAAGGGAATTTTGTTAGGCTGAATATCAATGGCTATGGACATAGCCGCAAGTTCACAAACAAGAATGGAAGGAGCAATACATCGTCTTCATCTCGGGGTTGGAGATATCGTCATTGGAGAAGTAAGAGCAAATCAAAAGCAGAGGGTGAAGCTGAAACTGATGGTATTTGTGACGAAGAGGGTTTAGTTTCAAAGACTCAAAGGCAGCAGCAGCAGCAGCAGTATGGAAGCTCCAAATTCAGTTACGAACTGATTGAACAGGCTGTGTTGGCTGCTCGAGATGAGCCATCTGATGAAATTCTGACTAAGCTGCTGAAGCTGACTCATGGATATGATTCTTTCCGCGAGGGACAGCTGACGGCTATCAAGCAGGTGCTTGTGGGTAAATCGACGATGCTAGTGCTGCCAACTGGCGCTGGGAAATCATTGTGTTATCAGTTACCTGCGGTGATTTTACCTGGGATAACTCTGGTTATTAGTCCATTAATAGCATTAATGGTTGATCAATTAAGGCAGCTACCTCCAATGATTCAGGGTGCTCTTCTTTGTAGCACTCAGACAAGTGAAGAGGCTTCTGAAACAGTAAGGCAGCTTCTGGAAGGAAATATAAAGGTGCTTTTTGTTTCACCTGAGAGGTTTTTAAATGCAGAATTTCTATCGATATTTGGGGCTACACCACTTATATCACTTGTAGTAGTGGACGAAGCTCACTGCCTTTCTGAGTGGTCCCATAATTTTCGGCCTTCGTATTTGAGGCTCAGGGCATCACTACTTCGAGCCAAGCTCAATGTTGAGTGCATTCTTGCAATGACTGCAACAGCGACAACTAAAACATTGCAGGCCATTATGAGCGCTCTAGAGGTTCCCCCAACCAATCTCATCCAGAAATCTCAAATAAGGGAAAATTTACAGCTATCTGTCACTTTGAGTGGAAATAGAATGAAAGATTTGATGATGTTGATGAAGTCTTCTCCTTTTGTGGAAGTTCCAAGCATCATTATTTACTGTAAATTTCAGTCTGAAACTGATTCAATAAGCAAATACCTTTGTGACAACAATATATCTGCAAAGAGCTACCACAGTGGCATCCAAGCGAAGGATAGGAGTCGCACACAGGAGTTGTTTTGTTCCAACAAGATTAGAGTGGTTGTGGCAACTGTGGCATTCGGCATGGGGCTTGATAAGAGTGACGTTGGAGCCGTTATTCATTATAGCTTGCCAGAAAGCTTGGAAGAATATGTTCAGGAGACTGGGCGTGCTGGACGGGATGGGAGATTGTCATATTGCCATCTGTTTTTGGATGATACCACTTATTTCAAGCTTCGTAGTCTTTTGTACAGTGATGGTGTAGATGAATATGCAGTAAACAAATTCCTCTGTCAAGTTTTCAGCACTGACATGGCCTTACCTGGAAAAATTTGCTCCTTTGTTAAAGAATCTACATCTCGGAAATTTGATATGAAAGAAGAGGTGATGCTAACGGCTCTAACCTACTTGGAGTTAGGGGAAGTGCAGTACTTGCGCGTACTACCGCAGCTAAATGTTACTTGTACTTTGTATTTTCACAAGACATCCTCATCATTGCTTGCTGGAAAGGATACTGTGGTTGCAGCAATTCTTAAGAAGTCTGAAAGAAAGCAAGGATCTTATGTGTTTGACATACCTACTGTGGCAAATTGCATTGGGATTACTGCTATTGACCTGTCAAATCAGTTGCAAAACTTGAAGACCAGGGGAGAAATAACATACGAGGTGAAGGACTTGGCCTTTTGTTATTTGATTGTGAAAAATCCGGGAGACTTTTGTTCCCTTGCAGCACATCTCACAAGATGGTTATCAGAGGTCGAAAGTTGTAAGGTACAGAAACTGGATACAATGTTTAATGCTGCAGCTTTTGCTGCAAAAGTGTGTGAGAAAATGGATGGTTGCTCCGGCACACTGCATACATGTTGCTTGCAAAGGAGGATTTTGGACTACTTTAGCAGAGATGATAATGACCCTCACTGTGATATGCCAAATAAGATGGGTCGAAGCAGCCCATTTCTGAGAGCAGATATAAAGGTGTTTTTGCAGAGTAACTCACATGCCAAGTTCACCCCGAGAGCAGTCGCAAGGATAATGCATGGCATCCCCAGTCCAGCTTATCCTTCTGCAACTTGGTCCAAATCTCATTTCTGGGGACGGTATTCACAGATAGACTTCCCAGTTGTTATGGAAGCCGCAACAGCAGAGCTCATGAATTTTGTTGGGAAGGATGTATTATAA 2919 0.4399 METDSDSDGSHISATPPREPKPSQAPLITLIASYKPKARVRVPSRSNLISNRKSTSNHKPLKPKPKTKTETKTEDETSEKDPPPEPLRSSDLSDLSGLSVQKRRLSDRNHDVSAPFSTENLPSRLIGRSATFSKIRRPNWNPESTDKDPVLPYVSIPQPEVGSCDRVEGARNRADSVTPDTISKAVHGGDSIKAVRKHPNSIASEVRPVPLKRPKSVGEGNFVRLNINGYGHSRKFTNKNGRSNTSSSSRGWRYRHWRSKSKSKAEGEAETDGICDEEGLVSKTQRQQQQQQYGSSKFSYELIEQAVLAARDEPSDEILTKLLKLTHGYDSFREGQLTAIKQVLVGKSTMLVLPTGAGKSLCYQLPAVILPGITLVISPLIALMVDQLRQLPPMIQGALLCSTQTSEEASETVRQLLEGNIKVLFVSPERFLNAEFLSIFGATPLISLVVVDEAHCLSEWSHNFRPSYLRLRASLLRAKLNVECILAMTATATTKTLQAIMSALEVPPTNLIQKSQIRENLQLSVTLSGNRMKDLMMLMKSSPFVEVPSIIIYCKFQSETDSISKYLCDNNISAKSYHSGIQAKDRSRTQELFCSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQETGRAGRDGRLSYCHLFLDDTTYFKLRSLLYSDGVDEYAVNKFLCQVFSTDMALPGKICSFVKESTSRKFDMKEEVMLTALTYLELGEVQYLRVLPQLNVTCTLYFHKTSSSLLAGKDTVVAAILKKSERKQGSYVFDIPTVANCIGITAIDLSNQLQNLKTRGEITYEVKDLAFCYLIVKNPGDFCSLAAHLTRWLSEVESCKVQKLDTMFNAAAFAAKVCEKMDGCSGTLHTCCLQRRILDYFSRDDNDPHCDMPNKMGRSSPFLRADIKVFLQSNSHAKFTPRAVARIMHGIPSPAYPSATWSKSHFWGRYSQIDFPVVMEAATAELMNFVGKDVL* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00383 972 SMART ultradead3 328 517 IPR014001 -
Eupl04g00383 972 Pfam DEAD/DEAH box helicase 335 498 IPR011545 GO:0003676|GO:0005524
Eupl04g00383 972 Gene3D - 518 708 IPR027417 -
Eupl04g00383 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 660 IPR027417 -
Eupl04g00383 972 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 447 456 IPR002464 -
Eupl04g00383 972 SMART helicmild6 561 642 IPR001650 -
Eupl04g00383 972 MobiDBLite consensus disorder prediction 63 87 - -
Eupl04g00383 972 Pfam Helicase conserved C-terminal domain 548 641 IPR001650 -
Eupl04g00383 972 Gene3D - 302 509 IPR027417 -
Eupl04g00383 972 PANTHER DNA HELICASE RECQ FAMILY MEMBER 306 841 - -
Eupl04g00383 972 MobiDBLite consensus disorder prediction 136 187 - -
Eupl04g00383 972 CDD DEXHc_RecQ4-like 320 515 - -
Eupl04g00383 972 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 689 IPR001650 -
Eupl04g00383 972 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 510 IPR014001 -
Eupl04g00383 972 NCBIfam RecQ family ATP-dependent DNA helicase 322 667 IPR004589 GO:0004386|GO:0006310
Eupl04g00383 972 FunFam ATP-dependent DNA helicase Q4 300 510 - -
Eupl04g00383 972 MobiDBLite consensus disorder prediction 1 119 - -
Eupl04g00383 972 FunFam ATP-dependent DNA helicase Q-like 5 518 709 - -
Eupl04g00383 972 CDD SF2_C_RecQ 518 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00383 Eupl-Chr4 6259923 6270511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00383 551 674 Eukaryotic Initiation Factors Gene Family AT3G19760 30.159 6.48e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00383 K10730 - nnu:104591653 1239.17