Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00372 ATGGCGGAGCCAAACCTTCATCCTTCGATAGATCCAAAGAGCGGTTTTTGCTCAGAAACGAAGATCTTCCACAGCCTTAGACCGCCCGTCTCCCTCCCACCGGAGACTGAGCACCTCTCCGCTGCTGAGTTCGCCTTTTCTCTCCATCGTAGCATTTCCTGTTCGCCTGAAACCACTGCACTGATCGACTCCGCCACTGGCCACCGCCTCTCCTACTCTGAATTCGTCAGCAAGACCGAAACCCTAGCTGCTTCTTTGCAAACCTTAATCGGTCTCTCCAGAGGCGATACCGCCTTCATACTCTCCCCAACCTGTTTTCAAATCCCAATCCTCTACTTCGCTCTCCTCTCCCTCGGCGTCGTTATCTCTCCCGGCAACCCAACCAGCACGAAATCTGAAATTTCCAGCCAAATCGCGCTCTGCAAACCTGTCATCGCCTTCGCCACCTCCGCCGCCGCTCACAAGCTCCCCTCCCTCCACCACACCACGGTCCTCCTAGACTCGTCCGAGTTTCACTCCATGATGACGATTCCAAGCGGGAAATTGAACCGAGTCCATGTGAACCTGTCTGACGCTGCAGCAATTCTCTACTCGTCCGGAACGACTGGACCGGTCAAGGGCGTCGTGTTGTCTCACATGAACCTGATATCGATGTTAGCCGGAGTTTACTCGCTACGGCAACCATCGCCGTCGGTAGTATTGTGCACTGTGCCGTTTTTTCATGTTTATGGGCTTATTTATAGTGTGAAGTGGATGGTGGTGGGGGAGACTCTGGTGTTGATGGAGAGGTTTGATCTGCGGCAGATGATGAGGGCGGTGGATGAATTTAGGGTTACGCATGTGAGTCTGGCCCCACCGGTGTTGGTGGCGATGACAAAACGGCACTCTGTGATTGACGGCCATGATTTGAGTTCGTTGCGTGTTGTGTTGTGCGGCGGAGCTTCGCTCGGGAAGGAGGTGATTGAGAGGTTTAAGGAACGGTTTCCGAATGTGCACCTGGCGCAGGCATATGGATTGACTGAATCGACTGGCGGAGCCTTCCGATCAGTGGGTCCTGATGAATATGGTCGATTAGGCTCAACAGGGCGGCTTGTAGCAAATTGCGAAGCAAAGATCGTTGATCCTGACACCGGTGTTGCTCTGCCTCCCTGCAAGCAAGGAGAGCTTTGGATTAGAGGGCCAACAATCATGAAGGGTTACATTGGCGACGGAGAGGCGACTGCTGCAACTTTGCACTCAGAAGGATGGTTAAGAACTGGTGATCTTTGTTATATGGACAACGATGGCTTCCTCTTTGTTGTAGATAGGTTAAAGGAATTAATCAAGTACAAAGGATACCAGGTTGCCCCTGCAGAATTGGAACAATTGCTTCTGTCCCACCCAGATATAATTGATGCTGCTGTAATTCCGTACCCAAACGAAGAAGCAGGTCAAGTGCCCATGGCATTTGTGGTAAGACAACCCCAGAGCAGCCTCAGTGAAGCTCAAGTGATGGATTTCATTGCCAAACAGGTTGCGCCGTACAAGAAAATAAAAAGAGTATCATTCATTAATGCCGTACCCAAGAATGCTCAAGGCAAGTTATTGAGGAAGGAGTTGATAAAGCTTGCACTCTCGAACCCTACTTCTAAGTTATAA 1638 0.5098 MAEPNLHPSIDPKSGFCSETKIFHSLRPPVSLPPETEHLSAAEFAFSLHRSISCSPETTALIDSATGHRLSYSEFVSKTETLAASLQTLIGLSRGDTAFILSPTCFQIPILYFALLSLGVVISPGNPTSTKSEISSQIALCKPVIAFATSAAAHKLPSLHHTTVLLDSSEFHSMMTIPSGKLNRVHVNLSDAAAILYSSGTTGPVKGVVLSHMNLISMLAGVYSLRQPSPSVVLCTVPFFHVYGLIYSVKWMVVGETLVLMERFDLRQMMRAVDEFRVTHVSLAPPVLVAMTKRHSVIDGHDLSSLRVVLCGGASLGKEVIERFKERFPNVHLAQAYGLTESTGGAFRSVGPDEYGRLGSTGRLVANCEAKIVDPDTGVALPPCKQGELWIRGPTIMKGYIGDGEATAATLHSEGWLRTGDLCYMDNDGFLFVVDRLKELIKYKGYQVAPAELEQLLLSHPDIIDAAVIPYPNEEAGQVPMAFVVRQPQSSLSEAQVMDFIAKQVAPYKKIKRVSFINAVPKNAQGKLLRKELIKLALSNPTSKL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00372 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 535 - -
Eupl04g00372 545 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Eupl04g00372 545 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Eupl04g00372 545 Gene3D - 439 539 IPR045851 -
Eupl04g00372 545 Gene3D - 22 438 IPR042099 -
Eupl04g00372 545 CDD 4CL 28 533 - -
Eupl04g00372 545 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Eupl04g00372 545 SUPERFAMILY Acetyl-CoA synthetase-like 48 539 - -
Eupl04g00372 545 Pfam AMP-binding enzyme 52 443 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00372 Eupl-Chr4 6137004 6144726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00372 10 545 Monolignol Biosynthesis Gene Families AT5G63380 52.432 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00372 K01904 - ming:122080076 752.666