Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00353 ATGAGAGCTTCCGCTGCTATACAGTCTCTTAAGCCGTCGCCTATACTCAGAGGAACTTTCCCAATCTCAAGGACTCGAATTTGTTTTCCCCGACAACTCTTCTTCTGTAGAGCAAAGTCTGCTGAATCTGGGGTGGATGGATTACACAACGTTAGAATGGTTCCTTTGACACTGTTAACAGCAGAAAAGGAAGAGGCCAAGGCTGTTTTAACCTTGTTCTTGAGAAAACAAGGTTTGAGCAATGCAGTTGCAGCAAGGGCAATCAATAAGTCGGACCATTTCATTGACCACCTTGTATCAAGGCTCCATTCTGTTCATAAAGCCCGATATCTAGTAGGAAGAGAGCTTACCACCCTCGAGATAAGGGATGCACTTATTCCATATCTTGAATCCCTTCTCGAAGAACATGGAGACATTCTGGTAGATGTGGTGGAGAACTTTCCAAACCCACCTGGGAAAGAAAGACCCATGACCCCAGCTTCTCTAACCAATTCAACTCTGAACTCCAAGAAACTAAAAGCCATGGCTCGAGTAAGCGAGATAGGCCCTGATGGGCAGCTCCCCCCACACATACTGTACCTCATAGACCTTGGCATGGACCTCGACCAGATCAAGGGAATGACCCGCAAGTTCCCATCTTTTGCATACTACAGCTTGGAGAGGAAAATCAAGCCTGTGGTTGAGTTTCTTCTTGAACTTGGGGTACCCCAATCAGACATTCCTACCATCCTCAACAAAAGACCTCAGTTGTGTGGCATCAGTCTCTCCGAGAACCTAATACCCACCATGACATACTTAGAGAACTTGGGTTTGGACAAGAGACAGTGGGCTAAGGTGATCCACCGGTTTCCAGCGTTGCTCACATACAGTAGACAGAAGGTGAAAGCATCAGTTGACTACCTCTACGAACTGGGTCTCTCGGCGGAGAGCATTGGGAAGATTCTTACACGCTGTCCGCACATTATAAGTTATAGTGTGGATGATAAGCTACGTCATACAGCTGAATACTTCCGCTCGATGGGAGTTGATGTTGCCATTCTATTTCACCGATCGCCACAGACTTTTGGTCTAAGCATTGAGGCCAATTTGAAGCCCGTGACAGAGTTTTTCTTGGAGAGGGGATACACTATGGCAGAGGTAGGGACCATGGTCTCAAGATATGGAGCTTTATATACTTTTAGCTTGACAGAAAACTTGATACCGAAGTGGGAGTTCTTTTTAACAATGGATTATCCAAGGTCAGAGCTGGTTAAGTTCCCTCAGTATTTTGGGTACAGTTTGGAGGAGAGAATTAAACCGAGGTATGCACGGGTGAGGGAGAGTGGGGTGAAGTTGTTGCTGAACCAGGTTTTATCTGTTTCAGATTCCAACTTCGAGAAAGCCTTGAAGAGAAAGATAAAGAAAATGCTCGATGAGCAGGCTCCTACAGGATTAAAATACATGGACGATCTTGGTTCAGACGTGGAAGAACTGAGACTATAG 1482 0.4568 MRASAAIQSLKPSPILRGTFPISRTRICFPRQLFFCRAKSAESGVDGLHNVRMVPLTLLTAEKEEAKAVLTLFLRKQGLSNAVAARAINKSDHFIDHLVSRLHSVHKARYLVGRELTTLEIRDALIPYLESLLEEHGDILVDVVENFPNPPGKERPMTPASLTNSTLNSKKLKAMARVSEIGPDGQLPPHILYLIDLGMDLDQIKGMTRKFPSFAYYSLERKIKPVVEFLLELGVPQSDIPTILNKRPQLCGISLSENLIPTMTYLENLGLDKRQWAKVIHRFPALLTYSRQKVKASVDYLYELGLSAESIGKILTRCPHIISYSVDDKLRHTAEYFRSMGVDVAILFHRSPQTFGLSIEANLKPVTEFFLERGYTMAEVGTMVSRYGALYTFSLTENLIPKWEFFLTMDYPRSELVKFPQYFGYSLEERIKPRYARVRESGVKLLLNQVLSVSDSNFEKALKRKIKKMLDEQAPTGLKYMDDLGSDVEELRL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00353 493 SMART mt_12 413 444 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 SMART mt_12 381 412 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 SMART mt_12 241 272 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 SMART mt_12 277 307 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 SMART mt_12 312 343 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 SMART mt_12 345 376 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 SMART mt_12 205 236 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 Pfam mTERF 186 302 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 Pfam mTERF 298 459 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 Gene3D Transcription termination factor 3, mitochondrial 248 468 IPR038538 -
Eupl04g00353 493 PANTHER CGI-12 PROTEIN-RELATED 157 464 IPR003690 GO:0003690|GO:0006355
Eupl04g00353 493 FunFam Transcription termination factor MTERF5 chloroplastic 248 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00353 Eupl-Chr4 5791156 5794775 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl04g00353 mTERF 5.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00353 K15031 - nnu:104591670 775.393