Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00341 ATGTTTCTCGTTGGTGGAGCACCTTCTGGAAATGCTTATGTTTGGGAGGTATCGAGTGGAAGAATGCTCAAGAGTTGGCGTGTCCATCAGAAATCACTGAATTGTCTTGTCTTTTCTGATGACGATTCTCTTCTCATTTCTGGTTCGGGTGATGGAGTGATCCGTGTATGGTCCATGATCAGTTTGCTAGATGTGGCAGATTGCAGAAACGTGCCTTCTTTCTTCCATTCTTGGTCGGAGCACCAGTCCTCTATAACTGGTCTGTTATCTGCATCAGGCAGCTCAAGTTCTGTATTGGTATCAAGCTCCCTTGACGGCACATGCAAGGTCTGGGACCTGGTCTCAGGAAGGCTTCTGCGAACTCGAGCTTTTTCACAAGCCATAACTGCAATTGTTCTTGATCCCGGAGAGCAGCTCCTGTTTTCTGGAAGTGCAGATGGAACTATATTTGTTACCTCACTTGATATCAGACTGGAAGAGAACTCTGCTGTTCCTTCAGGGGATCAATCGATGGTGCTAAGTGGACACAAAGGAGCCATAACTGCATTGTCCTTCAGTACGAGTGGATTGTGGCTCATCACTGCATCTGAGGATTGCACTGCCTGCCTTTGGGATGTTGCAAGTTGGATGGTTTCTAGAAGATTCAACCATAAGAAAGGGCAGATAACAAATCTACTGGTGATTCCACGCTCGTTGGTGCTCCCTGTGGTGGAAAACCATCAGAGAGTTTCTTATCAACTTCGTGTTTCTCTGCTAGACAAGTATCCTCAGCCAATCAGCACCTCTAGGGGAACAATTGCTCTTCTACCCACATATTGTTCACTTGAAGACAATCTTATCAACTCTGGTTCTCGAAGCACCGATTCAATGAACCGGCAGATTCTTGATTTGGAGCAAGGCCAGACACCTGCTGCAATACAGATGAAGGTGGAGACAAGCGTAGAGAACCGACTTTGGGCAACAAGCATGACGAAGCATGTCACAGACATGAACAAGCACTTGCGATCGCGATTACTGGATTTGATGCAAAGCAGGTTATTATTGTCTCCCAAACTTGATTTTTCTGCCACTGGAAAGAGAAAGAAGCTGAAGGTTAGCAGTCCACAACCACCAGGGGACGAATGA 1125 0.4631 MFLVGGAPSGNAYVWEVSSGRMLKSWRVHQKSLNCLVFSDDDSLLISGSGDGVIRVWSMISLLDVADCRNVPSFFHSWSEHQSSITGLLSASGSSSSVLVSSSLDGTCKVWDLVSGRLLRTRAFSQAITAIVLDPGEQLLFSGSADGTIFVTSLDIRLEENSAVPSGDQSMVLSGHKGAITALSFSTSGLWLITASEDCTACLWDVASWMVSRRFNHKKGQITNLLVIPRSLVLPVVENHQRVSYQLRVSLLDKYPQPISTSRGTIALLPTYCSLEDNLINSGSRSTDSMNRQILDLEQGQTPAAIQMKVETSVENRLWATSMTKHVTDMNKHLRSRLLDLMQSRLLLSPKLDFSATGKRKKLKVSSPQPPGDE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00341 374 FunFam Predicted protein 61 181 - -
Eupl04g00341 374 SMART WD40_4 115 153 IPR001680 GO:0005515
Eupl04g00341 374 SMART WD40_4 19 58 IPR001680 GO:0005515
Eupl04g00341 374 SMART WD40_4 71 112 IPR001680 GO:0005515
Eupl04g00341 374 SMART WD40_4 166 205 IPR001680 GO:0005515
Eupl04g00341 374 PANTHER WD-REPEAT PROTEIN 18 2 343 IPR045227 -
Eupl04g00341 374 PRINTS G protein beta WD-40 repeat signature 45 59 IPR020472 -
Eupl04g00341 374 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Eupl04g00341 374 PRINTS G protein beta WD-40 repeat signature 99 113 IPR020472 -
Eupl04g00341 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 26 59 - -
Eupl04g00341 374 ProSitePatterns Trp-Asp (WD) repeats signature. 192 206 IPR019775 -
Eupl04g00341 374 ProSitePatterns Trp-Asp (WD) repeats signature. 99 113 IPR019775 -
Eupl04g00341 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 26 59 IPR001680 GO:0005515
Eupl04g00341 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 121 IPR001680 GO:0005515
Eupl04g00341 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 208 IPR001680 GO:0005515
Eupl04g00341 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 208 - -
Eupl04g00341 374 Pfam WD domain, G-beta repeat 169 205 IPR001680 GO:0005515
Eupl04g00341 374 Pfam WD domain, G-beta repeat 75 112 IPR001680 GO:0005515
Eupl04g00341 374 Pfam WD domain, G-beta repeat 21 58 IPR001680 GO:0005515
Eupl04g00341 374 Gene3D - 157 234 IPR015943 GO:0005515
Eupl04g00341 374 Gene3D - 1 156 IPR015943 GO:0005515
Eupl04g00341 374 SUPERFAMILY WD40 repeat-like 3 234 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00341 Eupl-Chr4 5500828 5511237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00341 6 206 U-box Gene Family AT2G33340 26.471 1.08e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00341 K14829 - psom:113302831 499.59