Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00337 ATGGATGTTGCTGAAGTCGAAGAAAGTCTTTTCGCAGCCAGCGATGCCAAGTTACATGGAGGGATGTGTAGAATACTATCTGCTGTTGTTTGTAAAGTTTTGAGAATTTTTCCGGTCTTAGAAGCAGCACGGCCAAGGAGCAAATCGGGTCTCCAGGCCCTATGTTCATTGCATGTGGCACTTGAGAAGGCTAAGAATCTCCTCCAGCATTGCTCTGATTGTAGTAAACTTTACTTGGCTATAACTGGGGACTCTGTTCGCCTAAAATTTGAGAAGGCAAGATGTGCTCTTGAGGATAGTCTTAAGCGTGTTGAAGATATTGTCCCACAAACTATTGGTTGTCAGATTTCAGAGATTGTAAATGAACTAGGAGGGATCATGTTCTCTCTTGATCCATCAGAGAAGCAAGCTGGTGATGAAGTGATTGCATTGCTCCAGCAGGAGAGAAAATTTAACAGCAATTATAATGATAATAATGAGCTTGAAACCTTCCACCAAGCTGCCTCAAGGCTTGGCATTACTTCTTCTAGAGCAGCTCTAAGAGAGAGAAGAGCTCTCAAGAAGCTAATTGAAAGAGCCCGCATTGAGGATGACAAACGGAAAGAGTCCATCGTGGCTTACCTTTTACATCTCATGAGAAAATACTCCAAGTTATTCAGAAGTGATTTCTCAGATGACAATGATTCACAGGGATCGGGTCCTTGTTCCCCCACCGTTCAGGGTTCCTTTGAGGAATGCGGAGGGCCTGGAGGGAATGGCCAAGCCTTTGAGCGGCAGCTCTCAAAATTGAGTTCTTTCAATTTTAAGCCTGGCAGCAAGAGATCGGGGCAGATGCCAGTACCACCTGAGGAGCTGAGGTGTCCTATCTCATTGCAGCTCATGTATGACCCGGTCATCATCTCTTCTGGGCAGACTTACGAGCGGGTCTGCATTGAGAAATGGTTCAGCGATGGGCACAACACCTGCCCGAAGACTCAGCAGCAGCTCTCGCATCTTTGTTTAACTCCAAATTACTGTGTCAAAGGTCTCATTGCTAGTTGGTGCGAGCAGAATAGTGTCCCTGTTCCTGACAGGCCCCCAGACTCTCTTGATCTCAACTACTGGAGGCTGGTATTGTCAGAGTGTGAGTCTACGAATTCAAGATCCATGGAAAGCATCAGATCCTGCAAGTTGAAGGGGGTTAAGGTGGTTCCTCTGGAGGAGAGTGGTATCATTGAGGAGCTCGAAGGAAACGAAATGGGTGACATGTCTGGCCAGGAGAACTGTGAAGTGAACATGTTTGAAAGATATGAGAGCTTTCTAGCCATCTTGTGTGATGGGGAAAATATAAGGAGACAATGTGAAGTGGTAGAACAGATGCGGCTCTTGTTGAAGGTTGATGAAGAGGCCAGGACTTTTATGGGAGCTAATGGGTTCGTTGAGGCATTGGCGAAATTTTTGAGTTTGGCTGTCCATGAGGGGAATGAAAAGGCTCAGGAAATTGGAGCAATGGCTCTCTTCAACCTTGCTGTTAATAACAACAGGAATAAGGAGATGGTGTTATCTGCAGGAGTAATTCCGCTGTTGGAGGAAATGATTCTCAACTCAAACTCCTATGAATCAGCGACTGCACTCTACCTGAACCTTTCCTGCCTTGAAGAAGCCAAGCCTATCATTGGATCGAGCCAGGCAGTTCCCTTCTTAGCCCGGCTCCTTCGAGCCGACTACGAACCCCAATGCAAGCTCGATGCTCTCCACACCCTCCACAATCTCTCCACCCACTCAACCAACATCCCCTGCCTCCTCTCAGCTGGCATCATTGAAGGGCTTCAGGCCCTTCTCATGGGCCCCACTGACCACACATGGACTGAAAAGACGATTGATGTCTTCATAAACATAGCGTCAAATAAGTCGGGAAAAGAAGAAATTATATCGACTCCAGGCCTTATTAGTGCGCTTGCCGCTATCTTGGATACTAGTGAGCCCATCGAGCAGGAGCAAGCTGTCTCGTGTCTTTTGATGTTATGTAATGGGGACGAAAAATGCAGTGAAATGGTGCTACAAGAAGGGGTGATACCTGCACTGGTGTCAATCTCAGTGAACGGGACAACGAGAGGGCAAGAGAAGGCACAGAAGCTGTTGATGCTGTTTCGGGAGCAGCGGCAGCGGGATCCATCGCCTGTTTATATGCAGCATCAGCCTGACAGTAGCAGTGGGTCTCCTTCTGCCCCGGAATCAAAGCCGCCATGTAAATCAACTTCTAGGAAGATGGGAAGGGCTTGGACTTCTATATGGAAGAGCATGCACTTTTCAGTTTACGAGTGTTAG 2307 0.4729 MDVAEVEESLFAASDAKLHGGMCRILSAVVCKVLRIFPVLEAARPRSKSGLQALCSLHVALEKAKNLLQHCSDCSKLYLAITGDSVRLKFEKARCALEDSLKRVEDIVPQTIGCQISEIVNELGGIMFSLDPSEKQAGDEVIALLQQERKFNSNYNDNNELETFHQAASRLGITSSRAALRERRALKKLIERARIEDDKRKESIVAYLLHLMRKYSKLFRSDFSDDNDSQGSGPCSPTVQGSFEECGGPGGNGQAFERQLSKLSSFNFKPGSKRSGQMPVPPEELRCPISLQLMYDPVIISSGQTYERVCIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLIASWCEQNSVPVPDRPPDSLDLNYWRLVLSECESTNSRSMESIRSCKLKGVKVVPLEESGIIEELEGNEMGDMSGQENCEVNMFERYESFLAILCDGENIRRQCEVVEQMRLLLKVDEEARTFMGANGFVEALAKFLSLAVHEGNEKAQEIGAMALFNLAVNNNRNKEMVLSAGVIPLLEEMILNSNSYESATALYLNLSCLEEAKPIIGSSQAVPFLARLLRADYEPQCKLDALHTLHNLSTHSTNIPCLLSAGIIEGLQALLMGPTDHTWTEKTIDVFINIASNKSGKEEIISTPGLISALAAILDTSEPIEQEQAVSCLLMLCNGDEKCSEMVLQEGVIPALVSISVNGTTRGQEKAQKLLMLFREQRQRDPSPVYMQHQPDSSSGSPSAPESKPPCKSTSRKMGRAWTSIWKSMHFSVYEC* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00337 768 Gene3D - 551 712 IPR011989 -
Eupl04g00337 768 MobiDBLite consensus disorder prediction 225 248 - -
Eupl04g00337 768 SUPERFAMILY RING/U-box 276 358 - -
Eupl04g00337 768 MobiDBLite consensus disorder prediction 717 748 - -
Eupl04g00337 768 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Eupl04g00337 768 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Eupl04g00337 768 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Eupl04g00337 768 MobiDBLite consensus disorder prediction 225 239 - -
Eupl04g00337 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 517 IPR000225 GO:0005515
Eupl04g00337 768 SUPERFAMILY ARM repeat 433 707 IPR016024 -
Eupl04g00337 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Eupl04g00337 768 Pfam Armadillo-like 475 654 IPR006911 -
Eupl04g00337 768 Coils Coil 176 196 - -
Eupl04g00337 768 Coils Coil 766 768 - -
Eupl04g00337 768 PANTHER U BOX DOMAIN-CONTAINING 23 714 - -
Eupl04g00337 768 CDD RING-Ubox_PUB 282 334 IPR045210 -
Eupl04g00337 768 SMART arm_5 460 504 IPR000225 GO:0005515
Eupl04g00337 768 SMART arm_5 506 544 IPR000225 GO:0005515
Eupl04g00337 768 SMART arm_5 545 586 IPR000225 GO:0005515
Eupl04g00337 768 Pfam U-box domain 282 352 IPR003613 GO:0004842|GO:0016567
Eupl04g00337 768 Gene3D - 431 550 IPR011989 -
Eupl04g00337 768 MobiDBLite consensus disorder prediction 719 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00337 Eupl-Chr4 5380738 5388820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00337 1 768 U-box Gene Family AT1G27910 65.513 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00337 - - nnu:104592926 1203.73