Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00335 ATGGGTCATAACTTGAGAGGCACCAGTCCGATTATCCTAACCGTCCAATGTATGGACTTATTTTCTGATCCTTCAATCACAGCAGTTTTTTCATGCTATGACCCGTCTGAGGAGCGAGCTAGCTGGGGATGGTTTAGGGCTCAAATGTTATTTGTAGATTCAATAGGGATCTTCTTCCCTCGAGAGCAAATATCCACTCGCGCATCCCATCTTGTGTTCTTTCTTGCCCTCGATGTTCGTGTGAAGAGGAAGATGCTATACATGCTATTTTTAAATGTCCTTATAATGCTCGTTTATGATGGTTCATCGGTTCTAGCAGGTGGAAAGTCTGATTGGGCATGCTCAAAGGAAACGGCAGAGGCAAAGGCAATGTTGAAGGGTCTTCAGGTGGCTCAACATGTAGGACTGAACATCATTTTGGTGGAGTCAGTTGCAAAGACTCTTATTGATGCTCTAGGAAGGGATCCTCGAGGCAAGCTGGGTTTCGAATCTCTGAGACTCTGGTTTTGGCTTTCAGGGATTTCTCGAGGAGCTAAAATCGGAGCAAAAATGGCTGCTTTGAGTGCTCTATCTCTTTGTCCCTGCATGCTTTCATGTCGATCAAACCCTAGAAAGCCTTCTGTTTCTTGCTCCATTGGTGCTCCTTCTGTTACAGGTACCCGTGGTTCTAGAATACCTCGTAAGAAATCTGGAAGGAGAGAAGGGGCTGGGAAAAGTATGGAGGACTCTGTTCAGCGCAAAATGGAACAGTTTTATGAAGGGTCTGATGGCCCACCACTCCGTGTTCTCCCGATAGGAGGCTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACTACGATCGTTATATTTTGATTGATGCAGGTGTCATGTTTCCAGACTATGACGAGCTTGGCGTCCAGAAAATTATACCTGATACAGCATTCATAAAAAAATGGAGCCATAAAATTGAAGCAGTTGTTATAACACATGGCCATGAAGATCACATTGGTGCGTTGCCCTGGGTTATCCCAGCTTTGGATTCCCATACACCAATATATGCTTCATCCTTTACCATGGAGCTTATTAAAAAGCGTTTGAAGGAGTTTGGGATCTTTGTTCCCTCTAGGCTTAAGTTATTTAGGACAAGGAGAAGGTTCCTCGCTGGGCCATTTGAAGTAGAGCCTATCACGGTTACCCATTCAATTCCTGATTGTTGTGGATTGGTGCTCCGCTGTGCTGATGGTACAATTCTTCATACTGGGGATTGGAAGATTGATGAATCACCGTTAGATGGAAAAGCTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAAGGAGTAACACTTATGATGAGTGACTCAACAAATGTGCTTTCACCTGGAAGAACTATTAGCGAAACTGTTGTAGCGGATGCACTGTTGAGACGTATATCAGCTGCTAAAGGAAGGATTATTACTACTCAATTTGCATCTAATATACATCGTCTTGGAAGTGTGAAAGCTGCAGCTGACTTAACCGGTCGAAAGTTGGTATTTGTCGGGATGTCATTAAGGACATACTTGGATGCTGCTTGGAGGGACGGAAAAGCACCAATTGATCCATCGACTCTGGTAAAAGTGGAAGATATTGATGCCTATGCTCCAAAGGATTTGTTAATTGTTACAACAGGCTCTCAAGCAGAACCACGTGCTGCCCTGAACCTTGCATCATATGGAAGCAGTCACTCACTCAAACTGACCAAGGAGGATGTGATTTTATATTCAGCTAAGGTAATTCCTGGAAATGAGACCCGAGTGATGAAAATGCTGAACCGGATATCAGAGCTTGGTTCCACAATTGTAATGGGAAGGAATGAAGGATTGCATACTTCTGGTCATGGTTATCGTGGAGAACTGGAGGAAGTACTTAGGATTGTGAAGCCACAGCATTTTCTACCGATCCATGGAGAGCTCTTATTCCTGAAAGAGCACGAATTACTTGGGAAATCAACTGGCATCCGGCACACTACTGTGATAAAGAACGGAGAGATGCTTGGAGTTTCACATCTGAGAAACAGAAGAGTTCTTTCTAATGGTTTTATCTCCTTAGGGAAGGAGAACTTGCAGTTGATGTACAGTGATGGTGATAAAGCATTTGGAACATCGACCGAACTTTGCATTGATGAGAGACTAAGAATAGCATCAGATGGCATTATAGTCGTCAGCATGGAAATTTTGCGCCCACAAAGTGCGGATGGCCTACTTCAAACAAGTATCAAGGGAAAAATAAGAATCACTACTCGTTGCTTATGGCTTGACAAAGGGAAGCTTTTAGATGCACTTCACAAAGCTGCCCATGCTGCGCTATCGAGTTGCCCAGTAAACTGTCCTCTAGCCCACATGGAACGAACTGTCTCTGAGGTATTGAGGAAGATGGTAAGGAAGTACAGTAGTAAAAGGCCTGAAGTCATTGCTATTGCTGTAGAAGATACAGCAGGGGTTCTCACCGATGAGCTCAATGCAAGATTATCTGGCAAGTCCGGTGTCGATTTTGGTTTATCGGGATTGTTGAATAAAGTAGCTGATGAGCATCCGAAAAAGAGGAAATCGAGGAGGGTTGAGGAAGCAGGCAGTAGTGATACCTACTTTGAGGAAGACATTGCACAAGAAGCAATTGAAGGTGAGTTTGTTGGCGAACGACTGCTAATTGAGGAACACACAACAATGTCAAGTTCTGGTATGGCGGATTCATCATCTTTTATCCCAGAAGACTCAGATGATGTGTGGAAATCATTTGTAGAATCATCACCTGTTGAGCACTTGGTAAAAAACAAAAATGGTTCCATTCCAAAAGAACACTTGGAGCTCGCAGAAGATGGAACAGAAAGCAGCGGCGAGGATTCTATTGGACCATCAAATCCTAGGCCAGTGTCATCCAAGCCTCGGAACAAATGGAAGCCTGAGGAGGTTAAAAAACTAATCAAAATGCGTGGGGAGTTGGATAGCAAATTCCAAGTTGTGAGGGGGCGGATGGTCCTTTGGCAAGAGATATCTGTGAACTTGCTGGGTTATGGAATAAATCGAACTCCAGGCCAATGCAAATCTCTTTGGGCATCTCTGGTTCAGAAATATGAGGAAAGCAGGAGTGGTAAGAAAAGCAAGAGGAGTTGGCCTTACTTCGATGACATGGACAGGATTTTATCACATCGCGAGGCAGTGGCGACAAAATGA 3198 0.44 MGHNLRGTSPIILTVQCMDLFSDPSITAVFSCYDPSEERASWGWFRAQMLFVDSIGIFFPREQISTRASHLVFFLALDVRVKRKMLYMLFLNVLIMLVYDGSSVLAGGKSDWACSKETAEAKAMLKGLQVAQHVGLNIILVESVAKTLIDALGRDPRGKLGFESLRLWFWLSGISRGAKIGAKMAALSALSLCPCMLSCRSNPRKPSVSCSIGAPSVTGTRGSRIPRKKSGRREGAGKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTAFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTMELIKKRLKEFGIFVPSRLKLFRTRRRFLAGPFEVEPITVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKAFDREALEELSKEGVTLMMSDSTNVLSPGRTISETVVADALLRRISAAKGRIITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWRDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLTKEDVILYSAKVIPGNETRVMKMLNRISELGSTIVMGRNEGLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSTELCIDERLRIASDGIIVVSMEILRPQSADGLLQTSIKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSEVLRKMVRKYSSKRPEVIAIAVEDTAGVLTDELNARLSGKSGVDFGLSGLLNKVADEHPKKRKSRRVEEAGSSDTYFEEDIAQEAIEGEFVGERLLIEEHTTMSSSGMADSSSFIPEDSDDVWKSFVESSPVEHLVKNKNGSIPKEHLELAEDGTESSGEDSIGPSNPRPVSSKPRNKWKPEEVKKLIKMRGELDSKFQVVRGRMVLWQEISVNLLGYGINRTPGQCKSLWASLVQKYEESRSGKKSKRSWPYFDDMDRILSHREAVATK* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00335 1065 Gene3D - 264 676 IPR036866 -
Eupl04g00335 1065 MobiDBLite consensus disorder prediction 954 968 - -
Eupl04g00335 1065 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 617 658 IPR011108 -
Eupl04g00335 1065 Pfam Metallo-beta-lactamase superfamily 274 417 IPR001279 -
Eupl04g00335 1065 CDD GT1 972 1037 - -
Eupl04g00335 1065 Gene3D - 974 1035 - -
Eupl04g00335 1065 MobiDBLite consensus disorder prediction 946 975 - -
Eupl04g00335 1065 SUPERFAMILY Metallo-hydrolase/oxidoreductase 260 674 IPR036866 -
Eupl04g00335 1065 MobiDBLite consensus disorder prediction 229 243 - -
Eupl04g00335 1065 ProSiteProfiles Myb-like domain profile. 966 1030 IPR001005 -
Eupl04g00335 1065 SMART Lactamase_B_5a 272 469 IPR001279 -
Eupl04g00335 1065 PANTHER RIBONUCLEASE J 176 1065 - -
Eupl04g00335 1065 MobiDBLite consensus disorder prediction 853 873 - -
Eupl04g00335 1065 Pfam Myb/SANT-like DNA-binding domain 971 1055 IPR044822 -
Eupl04g00335 1065 Gene3D - 461 611 IPR042173 -
Eupl04g00335 1065 MobiDBLite consensus disorder prediction 853 868 - -
Eupl04g00335 1065 CDD RNaseJ_MBL-fold 263 674 - -
Eupl04g00335 1065 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00335 Eupl-Chr4 5333697 5352601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00335 973 1059 Trihelix Transcription Factor Family AT2G38250 34.831 8.09e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl04g00335 Lactamase_B 4.5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00335 - - nnu:104592923 1428.69