Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00328 ATGGCAGCACTGATCAGTAAACTCTGCTTGAGAGCTTTAGTCTTCTTCATCCTCTGGGTTTCTGTTTTGGCACAAGGACAGAGCTTACTAAGCTGTGAGACGAAATCTCTCGACGCTTCGGGTTACAGTTGTAAATTGCAGGATCAGTGTGGGACGTTCGCAATGTTTCGCACCAATTCCTACTACTCATCTCTTTCCAATCTGAGCTTTTACTTGGGCCTTAATCGATCGGCGATAGCGGAAGCTAGTGGGTTCTCTTCTGAAACCGAGTTTCTTCCAAAGGATCAGCCTTTGCTGATCCCAATTGATTGTAGCTGTAATGGGAGTTTCTTCCAGGCTGGAGTAACAAAGACTACCATCAAAGGGGAGAGCTTCAACGGGATTGCGGAATCATTGGAGGGATTGACAACCTGCAAAGCCATCCAAGACAAGAACCCAAGTCTCTCTCCGTGGCATCTCGAAGACAAAGTTCGGTTATTTATCCCATTGAAATGTGCTTGCCCATCTCAATTTGAGTTCAAGCAAGGAACAGAATTCCTATTGTCTTATCCTATAAGTGAAGGTGATACAGTTTCTAACTTAGCCTATAAGTTCAATACTACTATAGAAGCTATAATCTCTTCAAATAACAGATCAGGAACCTTTGAATCAGAAAGCATTACACCAGTTTCAACTCTTCTGATTCCGCTAAACAAGAAACCGACCCCCAGTCTTCTTTCTCAGCCCTGTCAACCCAATTCGGGTTTGCCCAGTAATAGCATCCCGGTAATACAGCCACCGAAGAATCGTTCAAGAAGATCAACGTTGTGGAAGATTGGAGTTTATACTGCACTTAGTGGGATTGCAGTAGGGGCGAGTGTTGCTGTCGCAGCAGTGATTTTGGTGCTCAAATGGAGGAAAAAGAAGCCTGGAGATGTTGAACTTCAACAGTTATGTATAAGAACTAAAAGCGAAAGAAAAGAGGTGTCGGAAGACTCCGAAGATCCTTTTGATGGTCAGACCATTGACACCACACCTCCCAAGATGGTAATGGAGACATACACTATGGAGGATCTGAGAAAAGCCACAGAGGACTTCAATTCAACTAATCTCATTGAGGGATCAGTGTTTCATGGCCGCCTCAATGGGAAGAACTTGGCCATAAAGCGTACAGAACCAGAAACCATCTCCCAAATTGATTTCGGGCTTTTCCATGATGCTCATCACCACCACCCCAATATAATTCGGCTTCTAGGCACTAGCTTGATTGATGGTCCTGAATCATTTCTGATTTTGGAGTACGCCAAGAACGGGTCACTGAAGGACTGGCTTCATGGGGGGTTGGCAATGAAGAGCCAATTCATCGCCTCCTGTTATTGTTTCTTGACATGGAACCAGAGGCTGAGGATCTGTCTTCATGTAGCCATGGCCTTACAATACATGCACCACATTATGAACCCGAGCTACGTCCACAGAAATATAAAGAGCAGGAATATCTTTCTAGATGAAGAATTCAATGCAAAGATCGGAAATTTTGGTATGTCAAGATGCATTGAAGATGAGTCAGAGGACCCAAAATATTTTTCGACTCATGCCTCCTCTTGGAGTACAGGATATCTAGCCCCAGAGTACCAACAACATGGTATAATTTCTTCAAGCACTGACATTTTTGCTTATGGGGTAGTCTTGCTTGAAGTGTTATCTGGGCAAACACCCATAACCAGGGTTGATGAGAAGGGAGAAGGTAGTGTTCGGCTCTCAGATAAGATCAAGTCTATATTAATATCTGATGATGGAGAAGAACTGAAGGAATGGATGGATAGTGCACTGGGAGAAGCTTATTCATTTGACGCAGCGGCGACATTGGCCAATCTTGCAAGAGCGTGTGTGGAGGAGGACCCATCTTCGAGACCAAGCGCTGGAGAGATACTCGACGCGATAACAAGTTTGGTGGAAGAGTTGCCGGAAGGGGAGCAAATTTCGAGCTGTGAAAGCTCTTCCAAGGTACCTTTGACCAATCCATAG 2004 0.4456 MAALISKLCLRALVFFILWVSVLAQGQSLLSCETKSLDASGYSCKLQDQCGTFAMFRTNSYYSSLSNLSFYLGLNRSAIAEASGFSSETEFLPKDQPLLIPIDCSCNGSFFQAGVTKTTIKGESFNGIAESLEGLTTCKAIQDKNPSLSPWHLEDKVRLFIPLKCACPSQFEFKQGTEFLLSYPISEGDTVSNLAYKFNTTIEAIISSNNRSGTFESESITPVSTLLIPLNKKPTPSLLSQPCQPNSGLPSNSIPVIQPPKNRSRRSTLWKIGVYTALSGIAVGASVAVAAVILVLKWRKKKPGDVELQQLCIRTKSERKEVSEDSEDPFDGQTIDTTPPKMVMETYTMEDLRKATEDFNSTNLIEGSVFHGRLNGKNLAIKRTEPETISQIDFGLFHDAHHHHPNIIRLLGTSLIDGPESFLILEYAKNGSLKDWLHGGLAMKSQFIASCYCFLTWNQRLRICLHVAMALQYMHHIMNPSYVHRNIKSRNIFLDEEFNAKIGNFGMSRCIEDESEDPKYFSTHASSWSTGYLAPEYQQHGIISSSTDIFAYGVVLLEVLSGQTPITRVDEKGEGSVRLSDKIKSILISDDGEELKEWMDSALGEAYSFDAAATLANLARACVEEDPSSRPSAGEILDAITSLVEELPEGEQISSCESSSKVPLTNP* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00328 667 MobiDBLite consensus disorder prediction 319 338 - -
Eupl04g00328 667 FunFam PTI1-like tyrosine-protein kinase 3 428 653 - -
Eupl04g00328 667 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Eupl04g00328 667 Gene3D LysM domain 181 237 IPR036779 -
Eupl04g00328 667 ProSiteProfiles LysM domain profile. 181 228 IPR018392 -
Eupl04g00328 667 MobiDBLite consensus disorder prediction 648 667 - -
Eupl04g00328 667 Pfam Protein kinase domain 368 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00328 667 ProSiteProfiles Protein kinase domain profile. 275 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00328 667 MobiDBLite consensus disorder prediction 652 667 - -
Eupl04g00328 667 Pfam LysM domain 185 229 IPR018392 -
Eupl04g00328 667 Gene3D Transferase(Phosphotransferase) domain 1 428 659 - -
Eupl04g00328 667 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 647 - -
Eupl04g00328 667 SMART LysM_2 182 229 IPR018392 -
Eupl04g00328 667 Gene3D Phosphorylase Kinase; domain 1 333 427 - -
Eupl04g00328 667 MobiDBLite consensus disorder prediction 239 260 - -
Eupl04g00328 667 SUPERFAMILY Protein kinase-like (PK-like) 339 639 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00328 Eupl-Chr4 5207806 5210079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00328 41 644 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.063 1.47e-144 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Eupl04g00328 Pkinase 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00328 - - ming:122079004 892.493