Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00316 ATGGCAGCCACATTCTGTAACCTTAACTCTGATGCTGGCCTCAAGAAACTTGATGAGTATCTCTTGACCCGAAGTTACATCACGGGATACCAAGCTTCAAAGGATGACATTACTGTCCATGCGGCCCTTTCAAAAGCTCCGTCATCTGAATATGTGAATGTGTCTCGGTGGTACAACCACATTGATGCACTTCTAAGGATTTCTGGTGTCTGTGGAGAAGGTAAGGGTGTCACGGTGGAGGGGTTTGCTTCTGTTACTGAAGAGGCTGTTGCAACTCCTGCTGGAGCTGACACAAATGTTGCAGCTGATGATGACGACGATGACGATGTGGATCTTTTTGGTGAAGAAACAGAGGAGGAAAAGAAAGCTGCTGAAGAACGTGCAGCCGCCATAAAGGCATCTGGGAAAAAGAAAGAGTCTGGAAAGTCCTCTGTTTTGCTGGACGTGAAGCCATGGGATGATGAGACAGACATGAAAAAGCTTGAAGAAGTCGTGAGAAGTATTCAGATGGAAGGATTGACCTGGGGAGCCTCCAAGCTTGCACCAGTTGGATATGGTATAAAGAAGTTGCAGATTATGATGACGATTGTGGATGACTTGGTATCCATTGATAACCTTATTGAGGACTATCTCACTGTTGAGCCTGCAAATGAATACATTCAGAGCTGCGATATTGTGGCATTCAACAAAATCTTTCTTTCTCCCGAAGATCACCCGCTTTTAGCGCAGAACCAGGCCATCGGCATGGTTGCCTCCGCTCAGGCCAATTTCATGAGAGTCATCGTGGAATCAGCCGGTTCGCCGCCCGTCCCTGAGAATTCTAGAAGCTTTAAAGCTCTTTTAGAACCCAAAGAAGAGGAGGAACCGAAAGTTGGAGTTGAATTGCTATGTGTGGTTAAGGCTGTTTTGAAGAAGATTAAGAGGAGGGTTTTGGTTGGGGATAAGGTGTTGGTTGGGTCAATTGATTGGGTCGATCGGAGAGGGATGATCGAGAATGTTTTCCAGAGGAGTTCCGAGATTATGGATCCTCCTGTTGCGAATGTTGATCATCTGTTGGTGCTATTCTCGATGGAGCAGCCAAAGCCCGAGGCGTTCTCACTTACGAGGTTCTTGGTTGAGGCTGAGTCAACAGGGATTCCACTTACACTCGCTTTAAATAAGTCTGAGCTCGTTGAGGAAGAGACGTTATTTGCATGGAAAGCAAAGCTTCGTGATTGGGGCTATGAACCACTATTTTGCAGTGTTGAGTCCAAAAAGGGTTTGGATTCTCTTGAATGCATCTTGAAAGAACAAACTACTGTGATTGTGGGTCCAAGTGGGGTTGGGAAGTCCAGTCTGATCAATGCTTTGAGAAGCAATCAGCATCAGCATGTTTCTGATGTTGCAGAAGAGGATAACTGGCTTGCACAGATTGAGGGGACCAATTGGTTTGCAGATCAGCGAGTAGGTGAAGTGTCAATGAGAAGTGGCAGAGGAAAGCATACTACACGACACGTCTCATTGCTTCCACTATCGGGGGGAGGATATCTTGCCGATACTCCAGGGTTTAACCAGCCTAGTTTGATGAAAGTAACAAAGAGAACTCTTGCACAATTGTTCCCAGAGATCAGGAACCTTCTCAACGCTATTGAGCCTAAAAAATGCTCATTCAATGATTGTTTGCATCTTGGTGAACCGGGATGCGTGGTGGAGGGGGACTGGGAAAGATATCCGTTCTATCTTCAACTGCTTGATGAGATCAAAATTAGAGAAGAATTCCAATTAAGAACATTAGGAACCAAAAGAGAAGGTGATGTAAGATTCAAGGTGGGAGATATGGGCGTCAAACAAGCGGAGCCCCGCCTTGAGCTTAAGAAGCACAGGAGGCAATCTCGGAAGCGGATGAACCAGTCAATACTAGATGAACTGGATGATCTGGATGATGACGACAACTTAATGGATGTTGAAGAAGGACCTTACGAGGTTAATGTAAGGGCGGTGGGGCATGAAAACCAGTAG 1998 0.459 MAATFCNLNSDAGLKKLDEYLLTRSYITGYQASKDDITVHAALSKAPSSEYVNVSRWYNHIDALLRISGVCGEGKGVTVEGFASVTEEAVATPAGADTNVAADDDDDDDVDLFGEETEEEKKAAEERAAAIKASGKKKESGKSSVLLDVKPWDDETDMKKLEEVVRSIQMEGLTWGASKLAPVGYGIKKLQIMMTIVDDLVSIDNLIEDYLTVEPANEYIQSCDIVAFNKIFLSPEDHPLLAQNQAIGMVASAQANFMRVIVESAGSPPVPENSRSFKALLEPKEEEEPKVGVELLCVVKAVLKKIKRRVLVGDKVLVGSIDWVDRRGMIENVFQRSSEIMDPPVANVDHLLVLFSMEQPKPEAFSLTRFLVEAESTGIPLTLALNKSELVEEETLFAWKAKLRDWGYEPLFCSVESKKGLDSLECILKEQTTVIVGPSGVGKSSLINALRSNQHQHVSDVAEEDNWLAQIEGTNWFADQRVGEVSMRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKVTKRTLAQLFPEIRNLLNAIEPKKCSFNDCLHLGEPGCVVEGDWERYPFYLQLLDEIKIREEFQLRTLGTKREGDVRFKVGDMGVKQAEPRLELKKHRRQSRKRMNQSILDELDDLDDDDNLMDVEEGPYEVNVRAVGHENQ* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00316 665 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Eupl04g00316 665 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 246 584 IPR004881 GO:0003924|GO:0005525
Eupl04g00316 665 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Eupl04g00316 665 Gene3D - 2 75 - -
Eupl04g00316 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 584 IPR027417 -
Eupl04g00316 665 FunFam Elongation factor 1-beta 1 like 136 231 - -
Eupl04g00316 665 CDD YjeQ_EngC 346 578 IPR004881 GO:0003924|GO:0005525
Eupl04g00316 665 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Eupl04g00316 665 NCBIfam ribosome small subunit-dependent GTPase A 310 464 IPR004881 GO:0003924|GO:0005525
Eupl04g00316 665 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Eupl04g00316 665 Pfam RsgA GTPase 333 521 IPR010914 GO:0003924|GO:0005525
Eupl04g00316 665 Gene3D - 332 521 IPR027417 -
Eupl04g00316 665 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Eupl04g00316 665 SUPERFAMILY Nucleic acid-binding proteins 291 336 IPR012340 -
Eupl04g00316 665 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 233 643 IPR004881 GO:0003924|GO:0005525
Eupl04g00316 665 Gene3D - 135 231 IPR014717 -
Eupl04g00316 665 Coils Coil 114 134 - -
Eupl04g00316 665 FunFam Elongation factor 1-delta 1 3 78 - -
Eupl04g00316 665 Gene3D Probable gtpase engc; domain 3 522 590 - -
Eupl04g00316 665 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 337 519 IPR030378 GO:0005525
Eupl04g00316 665 SUPERFAMILY GST C-terminal domain-like 10 68 IPR036282 -
Eupl04g00316 665 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
Eupl04g00316 665 ProSiteProfiles EngC GTPase domain profile. 346 517 IPR010914 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00316 Eupl-Chr4 4949686 4958301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00316 3 231 Eukaryotic Initiation Factors Gene Family AT2G18110 80.870 4.21e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00316 K06949 - nnu:104591698 660.988